Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3890g00019 ATGACTCCGGCGAATCTGGCAGGCCAGTTTGGTGACACAACATACACAAAGGTCTTTGTAGGAGGCTTGGCTTGGGAGACTCAGAAGGAAACTATGAAGAAATATTTTGAGCAGTTTGGTGAGATCTTGGAGGCCGTCGTCATCACTGACAAAGCTACTGGCAAATCTAAAGGCTATGGATTCGTAACTTTTCGGGAACCAGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTGATAGATGGCAGAAGGGCTAACTGCAACCTGGCTTCTTTGGGTGTCCAGAGATCCAAGCCATCAACCCCAAAGCACGGAGGAGGAGGCAGGAACTTCAGGGTGATGGGTTCGTTTCAGACAGGGTTTGGAGGAGCAGGATCGACTTTTCCTTCTGCAGCGGCAGCAACACTTCCTCATTATGCTCTCCAGCAAGGAACACCCTATAATGTTTATGGGTACTCTCCATACTCACCAGATTACACTTACCCGGGCTACTATAGTGTTTATGGAGGAGCGACCCAGTACCCACTGTATGGAACTGGACCAGGAGGCATGATGACCGGTGGTGCGGCGGCAGCCACCACCATGTACCCATATCTGCAGTTCGGAGAAGGGAGCGGCAGCGGTGTAACTGGCGGCTACACTTCCGGTCAGGGCTACGGTGTCTACTACCCACCGCAGCTCTTTCAGTACTCTCCCATTACTTCATCTGCTGGCTACGCTCAGCACTATGGTCCACCTATGTCTCTTGCGCCTTCGCCTGCTTTGCAATCAGGCGTGAAGATGGCTCTTCAAGCTCCCCCAATTCCTCATCGTTAG 819 0.5226 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGAGSTFPSAAAATLPHYALQQGTPYNVYGYSPYSPDYTYPGYYSVYGGATQYPLYGTGPGGMMTGGAAAATTMYPYLQFGEGSGSGVTGGYTSGQGYGVYYPPQLFQYSPITSSAGYAQHYGPPMSLAPSPALQSGVKMALQAPPIPHR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3890g00019 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Pral3890g00019 272 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Pral3890g00019 272 PANTHER BOULE-RELATED 4 249 - -
Pral3890g00019 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Pral3890g00019 272 Gene3D - 4 112 IPR012677 -
Pral3890g00019 272 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pral3890g00019 272 CDD RRM_RBM24_RBM38_like 16 91 - -
Pral3890g00019 272 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3890g00019 Pral-Chr3890 160995 168619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3890g00019 1 188 C2H2 Transcription Factor Family AT2G19380 27.751 6.45e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3890g00019 - - zju:107405501 425.246