Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3890g00005 ATGTCTCAAGACAGTTCAGACACTTCTTCGGCTTGCTGCTCAAGATCGGATCATTTGGATTCAGCTTCTGCTGAGCTCAAGCTTTACCGAGCCTTCATTTTCTCTGTACCCATCTTCTTCACTTTCATCCTGCTCTTTCTGTTCTACGTGTTCTACCTTCGACCTCGTCGGGTTGATTGGTCGTCTCTAAGGATGAGAGCGTTTGCGGCTGCCGAGGATAATGACGGTAACTCCAGGTCGGAATTGGGTTTGAAGAAAGAACTGAGAGAGATGCTGCCGATTATCGTTTACAAAGAAAGCTTCTCAGTTAAAGATACACAATGCTCAGTTTGCCTTTTGGACTACCAACCAGAAGACAAGCTTCAACAGATACCTGCATGCGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTCACCAACCACAGCACCTGCCCTCTCTGTCGCTTGTCCCTTTTAGCTTCTGCTAAATCTTCAACTGAGACATCTAATTTACAGAGACCATCTAGCAATGAAGAAACACCAACTGCACAATTCTCTGAATCAAGATCTACAACTCATCCAGATAATAGTGTTGCCCAAAGTTGCTCTAGAGATAATGCAGGCAGTGCCCACTGTATTGATATTGAAAGAGGAAATGGAGAAACCAGTTAG 657 0.446 MSQDSSDTSSACCSRSDHLDSASAELKLYRAFIFSVPIFFTFILLFLFYVFYLRPRRVDWSSLRMRAFAAAEDNDGNSRSELGLKKELREMLPIIVYKESFSVKDTQCSVCLLDYQPEDKLQQIPACGHTFHMSCIDLWLTNHSTCPLCRLSLLASAKSSTETSNLQRPSSNEETPTAQFSESRSTTHPDNSVAQSCSRDNAGSAHCIDIERGNGETS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3890g00005 218 Pfam Ring finger domain 107 150 IPR001841 -
Pral3890g00005 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 157 IPR013083 -
Pral3890g00005 218 SMART ring_2 108 149 IPR001841 -
Pral3890g00005 218 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Pral3890g00005 218 PANTHER OS11G0150450 PROTEIN 40 189 - -
Pral3890g00005 218 SUPERFAMILY RING/U-box 92 155 - -
Pral3890g00005 218 MobiDBLite consensus disorder prediction 161 202 - -
Pral3890g00005 218 FunFam RING-H2 finger protein ATL7 74 155 - -
Pral3890g00005 218 CDD RING-H2_EL5-like 107 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3890g00005 Pral-Chr3890 69502 76153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3890g00005 21 214 C3H Transcription Factor Family AT4G10150 52.284 8.32e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3890g00005 K19039 - qsa:O6P43_001690 270.781