Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3885g00005 ATGGATGGAGAGAATAAGAGCAGTGGAGACGGCGGGGATGTCCAGATGGCGGCTCCGGCACCGGCGCCCATTTCTAATGCGAACGCTCCGCCGCCGTTCCTTAGTAAGACCTATGACATGGTGGACGACCCGGCCTCTGATGCGATCGTGTCTTGGAGCCCAACCAACAATAGCTTCGTGGTTTGGAACCCCCCAGAGTTTGCCAGAGATCTATTGCCCAAATACTTCAAGCACAACAATTTCTCTAGCTTTGTGAGGCAGCTGAACACTTATGGTTTTCGGAAGGTGGATCCAGATCGATGGGAATTTGCAAATGAGGGTTTTTTAAGAGGTCAGAAGCACTTGCTTAAGAGTATTACTCGACGAAAACCTGCCCACGGCCATAATAATCAACAAACACAGAACTCCCATGGACAGAATGCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAAGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAGGAGCTTGTGAGGTTGAGACAGCAGCAACAGACCACTGATAACCAGCTGCAGACAATGGTTCAGCGCCTTCAGGGAATGGAACAGCGGCAACAGCAGATGATGTCATTCCTTGCCAAGGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAGAATGAGAGCAATAGACGCATAACTGAAGCCAACAAAAAACGCCGGCTTAAGCAGGAAGGTGTTGCTGAAACAGAATGTACTCCTGCTTCTGATGGACAAATTATTAAGTATCAGCCTCTGATGAATGAAGCGGCAAAAACAATGCTAAGGAAGATAATGAAAATGGATACTGCCAGGCAGGAATCTTTTAACAACAACCTTGATAACTACTTGATTGGGGATGGTTCATCATCATCCAGTGCAATGGACAGTAGTAGCTCTTCAAGCTGGACTTCTGGAGTTACACTTCAAGAGGTTCCGCCAACTTTAGTGCAGTCTTCTCACATTCCAGCTGCTTCAGGAACCTCAGGCCCCTCAGCTGACAAATCCAAAATCCCATCTACAAAAACTGCACCTGCTGTCTCTGCTTCTCAGGCAGACATCATCATGCCTGAGCTTTCATCCATACCAGAGATGGTAACAGAGAGTATTCCTGATGTTCCTGGAGAAAATTATGTGAGACCTGCAATGGACAACACGGATCCTACTTCGTTGGGAGTGAATGAGTCATTGGCCGCTGATGTTGGTAGCATTTCTCCTGATGCAGACATTGAGGATTTGTTACGCAATCCTTCCTTTTGGGATGATTTTCTTCTGCGAAGTCCGTTGCCTGAAGATATTGAGATCAATGCAGCTGAAGCACTGTCTAATGAGGCGCAGCCAATGGAAGACGGGTGGGACAAAGCTGAACACATGAGCCAACTTACGGAGCAGATGGGTCTTCTTGCATCTGATCCAAGAGCAGGTTGA 1461 0.475 MDGENKSSGDGGDVQMAAPAPAPISNANAPPPFLSKTYDMVDDPASDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHNNQQTQNSHGQNASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEANKKRRLKQEGVAETECTPASDGQIIKYQPLMNEAAKTMLRKIMKMDTARQESFNNNLDNYLIGDGSSSSSAMDSSSSSSWTSGVTLQEVPPTLVQSSHIPAASGTSGPSADKSKIPSTKTAPAVSASQADIIMPELSSIPEMVTESIPDVPGENYVRPAMDNTDPTSLGVNESLAADVGSISPDADIEDLLRNPSFWDDFLLRSPLPEDIEINAAEALSNEAQPMEDGWDKAEHMSQLTEQMGLLASDPRAG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3885g00005 486 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3885g00005 486 Gene3D - 25 123 IPR036388 -
Pral3885g00005 486 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3885g00005 486 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3885g00005 486 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3885g00005 486 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3885g00005 486 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 307 IPR027725 -
Pral3885g00005 486 MobiDBLite consensus disorder prediction 1 34 - -
Pral3885g00005 486 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Pral3885g00005 486 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3885g00005 486 MobiDBLite consensus disorder prediction 331 359 - -
Pral3885g00005 486 FunFam Heat shock transcription factor 1 26 123 - -
Pral3885g00005 486 Coils Coil 151 178 - -
Pral3885g00005 486 MobiDBLite consensus disorder prediction 331 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3885g00005 Pral-Chr3885 21113 24942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3885g00005 1 480 HSF AT1G32330 52.941 1.42e-170 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral3885g00005 HSF_DNA-bind 3.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3885g00005 K09419 - gmx:732544 640.958