Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3885g00004 ATGAGCTTTCAGGATATCGAAGCCGGCCGGCCTTTTGCTCCGAGGCGAAACCTAATCAATGGCAAGCAAGACCCTACACAGGCGGTAGCGTCGGGTGTATTTCAGATCAACACAGCCGTGTCTACGTTTCAGAGGCTCGTCAACACCCTTGGAACCCCGAAAGACACGCCCGAGCTCCGTGAAAAGCTGCACAAGACGAGACTGCATATTGGGCAATTGGTGAAGGATACATCAACTAAACTTAAGCAAGCTAGTGAAATAGATCATCATGGTGAAGTTAATGCAAGTAAGAAGATAGCAGATGCCAAACTTGCAAAAGACTTTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCCCAACGGCTTGCAGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAGCAGTTCTTCCCTCAAGCTATACAGCTAGTGAGATAGATGCCTCTGGTAAGAGCCAAGAACAACAGGCTCTTCTTGCTGAATCAAGAAGGCAGGAGGTCTTGATGTTGGATAACGAGATAGTGTTTAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAGCAAATTGGCGAAGTAAATGAGATTTTCAAAGATCTTGCTGTACTTGTTCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAATATTGAGAACTCGCATGCAGCAACTGCACAGGCGAAATCTCAATTAGTGAAAGCTGCAAAGACCCAAAGATCAAATTCATCTCTGACTTGCTTACTCTTGGTGATCTTTGGAATTGTGCTCCTCATCGTGATCATAATCCTTGCGGCCTAG 819 0.4542 MSFQDIEAGRPFAPRRNLINGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSTKLKQASEIDHHGEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEIDASGKSQEQQALLAESRRQEVLMLDNEIVFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLIVIIILAA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3885g00004 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pral3885g00004 272 SMART tSNARE_6 174 241 IPR000727 -
Pral3885g00004 272 SUPERFAMILY t-snare proteins 22 234 IPR010989 GO:0016020|GO:0016192
Pral3885g00004 272 CDD SynN 23 155 IPR006011 GO:0016020
Pral3885g00004 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Pral3885g00004 272 FunFam Syntaxin-22 like 20 133 - -
Pral3885g00004 272 Pfam SNARE domain 215 267 IPR000727 -
Pral3885g00004 272 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Pral3885g00004 272 SMART SynN_4 15 127 IPR006011 GO:0016020
Pral3885g00004 272 Gene3D - 173 272 - -
Pral3885g00004 272 PANTHER SYNTAXIN 27 263 IPR045242 -
Pral3885g00004 272 Gene3D - 20 133 - -
Pral3885g00004 272 CDD SNARE_Qa 199 240 - -
Pral3885g00004 272 FunFam Syntaxin-22 like 172 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3885g00004 Pral-Chr3885 16626 20375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3885g00004 1 260 SNARE and Associated Proteins AT5G46860 78.462 1.45e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3885g00004 - - gmx:547656 419.853