Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3884g00020 ATGTATGGGGATTGTCAAGTGATGTCAAGTATGGGAAGTAACGTAGTAGTAAACTCAGAAACGCTCTTCTCTTCCTCAATCCAAAACTCCAACTTCAACTTCATCCCCACCATGCCTTTCCAGCCTTTCCAACCTCCCTTGAAAGAAGAAGAGGGGATGATGATGCGAGGGAAGGAAGAGATCATGGAGAGTGGTTCTGGTAGCGAACAAGCTGATCAAGACAAGTCTGGGAACGAGCAAGACAGTGAACAGCCAGCCAAGAAGAAACGCTACCACAGGCATACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGACGACAAACAAAGGATGAAACTGAGCCAAGAGCTGGGCTTGAAGCCACGCCAAGTCAAGTTCTGGTTTCAAAATCGTCGAACTCAGATGAAGGCTCAACAAGATAGAGCTGATAATGTGATACTGAGAGCAGAAAATGATAACTTGAAGAATGAAAATTATCGTCTGCAAGCAGCTCTGCGTAATGTGATGTGTCCTAATTGTGGTGGTCCAGCGATGATGGGTGCTGATCTGGGCATGGATGACCATCAGCTTCGCCTTGAAAATGCTCGCCTTAGAGAAGAGCTGGAACGCGTGTGTTGTCTCACATCAAGATACACAGGCCGTCCAATGCAAACAATGGCGTCTCCAGCTCCTCCTCTGCTGGCTCCTTCTTTGGACTTGGACATGAACATATACTCAAGGCACTTTGCTGATCCTGTCCCTCCTTGTACTTCCGAGATGATTCCTGTCCCAATGTTGCCTCCTTCCGATGCTTCGCCATTCCCAGATGGCGGCCTGTTATTGTTGGAAGAGGAGAAATCTCTGGCTTTGGAGCTCGCAGTGTCGTCCATGGATGAACTCGTGAAGATGTGTCAGCCAAATAAGCCGCTCTGGATAAGAAACAGTGAGAATGAGAGGGAAATCCTCAATTTTGAGGAGCATGCCAGGCTCTTTCATTGGCCCCTTAACGTCAAGAACCATTCTAGTGAACTCAGGAGAGAAGCTAGCCGTGACACTGCTGTGGTTATAATGAATAGCGTCACTCTTGTTGACGCCTTCCTTGATGCTATTAAGTGGATGGAGTTATTCCCCACCATTGTTTCTAGGGCAAAAACTGTACAAGTTATATCTTCTGGTGCATCTGGTCATGCAAGTGGATCTCTTCAACTGATGTACGCAGAATTACAAGTGATTTCTCCCTTGGTGCCCACTCGCGAGACTCATTTTCTTCGTTACTGCCAACAAAACGCCGAGGAAGGGACCTGGGCCATCGTTGATTTTCCTCTTGACAGCTTCCATGAAAATTTTCACCACTCTTATCCGCGATACTGCAGGCGACCTTCTGGCTGTATTATTCAAGACATGCCAAATGGGTACTCAAGGGTAACGTGGGTGGAGCATGCAGAGGTGGAAGAGAAACCAGTGCATCAGATATTCAGCAACTATGTGTACAGTGGAATGGCTTTTGGAGCACAGCGTTGGTTATGGGTTTTGCAGAGACAATGTGAGAGGGTCGCCAGCCTCATGGCAAGGAATATTTCAGACCTTGGAGTGATTCCGTCACCAGAAGCCAGGAAGAACTTAATGAAACTGGCCCAGAGAATGATACGAACTTTTAGCCTGAACATGAGCACGTCGAGTGGGCAATCATGGACGGCGTTATCTGATTCTCCTGAAGACACTGTTAGAATTACAACGAGGAAGATTACAAACCCAGGGCAACCTAATGGGGTCATACTCAGTGCAGTCTCCACCACCTGGCTTCCTTATTCTCACTCCAAGGTCTTCGACCTCCTCAAGGATGAACGTCGCAGATCTCAGTTGGATTTTCTCTCCAATGGGAACTCTCTTCATGAAGTGGCTCATATCGCAAATGGCTCACATCCTGGAAATTGCATCTCCCTTTTGCGCATAAACGTGGCGAGCAACTCATCTCAGAATGTAGAACTAGTGGTGCAAGAAAGCTGCACCGATCAGTCGGGGAGTCTGGTAGTGTACGCCACCATCGACGTGGAATCGATTCAGCTCGCCATGTCCGGTGAGGATCCTTCCTCCATAGCACTTCTTCCCCAGGGCTTCGTCATCGTTCCTGCAACAACCTCCGCCGCAGCCATCAATGCCAATTCAACTGAATCTGCAGCCACTGCCGCGGGAGCACCGCCGCCGCCTGCTTCTACACTGAACCAAGCTTGTCTTCTCACAGTGGGCCTCCAAGTTCTGGCCAGCACCATCCCAACTGCGAAACTCAACCTCTCCAGCGTCACCGCCATAAACAACCATCTCTGCAACACTCTCCACCAAATCGAAGCTGCTCTTTGCACTGACAACGGCACTTACGTCGTCGGTTCCTGCACTACTGAACCCACCACTACCACAACCCCTAAGCAATAG 2430 0.4889 MYGDCQVMSSMGSNVVVNSETLFSSSIQNSNFNFIPTMPFQPFQPPLKEEEGMMMRGKEEIMESGSGSEQADQDKSGNEQDSEQPAKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENDNLKNENYRLQAALRNVMCPNCGGPAMMGADLGMDDHQLRLENARLREELERVCCLTSRYTGRPMQTMASPAPPLLAPSLDLDMNIYSRHFADPVPPCTSEMIPVPMLPPSDASPFPDGGLLLLEEEKSLALELAVSSMDELVKMCQPNKPLWIRNSENEREILNFEEHARLFHWPLNVKNHSSELRREASRDTAVVIMNSVTLVDAFLDAIKWMELFPTIVSRAKTVQVISSGASGHASGSLQLMYAELQVISPLVPTRETHFLRYCQQNAEEGTWAIVDFPLDSFHENFHHSYPRYCRRPSGCIIQDMPNGYSRVTWVEHAEVEEKPVHQIFSNYVYSGMAFGAQRWLWVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTALSDSPEDTVRITTRKITNPGQPNGVILSAVSTTWLPYSHSKVFDLLKDERRRSQLDFLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQNVELVVQESCTDQSGSLVVYATIDVESIQLAMSGEDPSSIALLPQGFVIVPATTSAAAINANSTESAATAAGAPPPPASTLNQACLLTVGLQVLASTIPTAKLNLSSVTAINNHLCNTLHQIEAALCTDNGTYVVGSCTTEPTTTTTPKQ 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3884g00020 809 FunFam Homeobox-leucine zipper protein HDG1 74 161 - -
Pral3884g00020 809 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Pral3884g00020 809 SUPERFAMILY Homeodomain-like 79 146 IPR009057 -
Pral3884g00020 809 CDD homeodomain 88 146 IPR001356 GO:0003677
Pral3884g00020 809 Gene3D - 72 155 - -
Pral3884g00020 809 CDD START_ArGLABRA2_like 293 516 - -
Pral3884g00020 809 Coils Coil 144 174 - -
Pral3884g00020 809 SMART START_1 291 517 IPR002913 GO:0008289
Pral3884g00020 809 MobiDBLite consensus disorder prediction 60 95 - -
Pral3884g00020 809 MobiDBLite consensus disorder prediction 74 88 - -
Pral3884g00020 809 SMART HOX_1 86 149 IPR001356 GO:0003677
Pral3884g00020 809 Gene3D - 303 504 IPR023393 -
Pral3884g00020 809 Pfam START domain 292 517 IPR002913 GO:0008289
Pral3884g00020 809 ProSiteProfiles START domain profile. 282 520 IPR002913 GO:0008289
Pral3884g00020 809 SUPERFAMILY Bet v1-like 553 782 - -
Pral3884g00020 809 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 785 IPR042160 -
Pral3884g00020 809 Pfam Homeodomain 88 143 IPR001356 GO:0003677
Pral3884g00020 809 SUPERFAMILY Bet v1-like 283 519 - -
Pral3884g00020 809 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3884g00020 Pral-Chr3884 143338 148818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3884g00020 8 785 Homeobox Transcription Factor Family AT5G46880 58.950 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral3884g00020 START 2.1e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3884g00020 - - gmx:100812829 1254.97