Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3884g00019 ATGGTGGAAAGAAGACTTTCTTTATCCAAGGAAGCTAGACATGGGCTAGAATTATTGAAGCGTAAAAGGCTTCAACGGGCAAAACTCATCACTGCCACTGAAACAGCTATTGCTAGCACAATGACTAGAAGCGGAGGAGATGCTTTAAGGGCTTCCACTTCATGTGGGGTCAGGTTTCATGGCAATGCAGATGTTTTCTCCAAGCGGAAGGTGAATAAGTTTGAGACAAGTGATCTTGAATGGACTGAGAAAATTCCAGAATGTCCTGTGTATTCTCCGACAAAAGAGGAATTTGAGGATCCTCTGGTTTACTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAGATTATTTCACCTCTAAGTGCGTCTGTTCCTGCTGGAGTTGTTTTAATGAAAGAGAAAGCAGGATTCAAGTTCACAACTAGAGTACAGCCTCTTCGGCTTGCTGAGTGGGACACTGAAGACAAAGTCACATTTTTCTTGAGTGGAAGCAATTATACGTTCCGTGATTTTGAGAAAATGGCGAATAGAGTTTTTGAGCATAGATATTCTAGTGCTGGATGTCTTCCCGCCACATTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGACAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCTTTTTCGTCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTAAAGAAAGTTTCACGGTTGCCCAAGTCCATTTTGCGCCTCTTGGAAACAGCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTCTTCAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGTATAAATTATCATCACTGCGGGGCGCCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCTCTGGATTTTGAAAGGGTGGTGAGAGAACATGTGTACTCCAAAGATATTCTTTCTAATGATGGGGAGGATGGAGCTTTTGATGTTCTTCTGGGGAAAACAACTCTGTTCCCTCCAAATATTTTGTTGGATAATGAAGTGCCTGTCTATAAAGCCGTTCAAAAGCCGGGGGAATTTGTAATAACTTTTCCTAGAGCATATCATGCCGGATTTAGTCACGGTTTCAACTGTGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTATTGCTAGCCAGCGATATGCACTTCTTAACAGGATGCCTTTACTGCCTCACGAAGAACTAGTATGCAAAGAAGCAATGCTTCTTCATACAAACTCAGAACTTGAAGTTTCAGACTTTCCCTCTGCGGATCTGTCGGCTCATAATTGCATAAAGATTTCTTTTGTGAACCTAATACGCTTTCAGCATTGTGCTCGTTGGCTTCTAATGAAATCGAGGGCTTGTTCGAGTGTTTTTACACATTCCCACAGCACAATTCTCTGTAGCCTCTGCAAACGGGATTGTTATGTTGCATATGTAGACTGTGAGTGTCACATGCACCTGGTGTGCCTTCGCCATGATGTTAAAGCTCTTGGCTTCGCCTGTGGGAGCCAACACACTCTTTATGTGAGGGAGGATATTAGTGATCTGGAAGCTGCAGCCAAGAGGTTTGAGCAAGAAGGTGGAATCGTGGATGAGATTCTTAAGCAAACCAAGGGTGACAATAACATGTATTCATATCCTTTGTCAAATATGTTCCAGAGAGCTGAAGCAAATGGATATACTCCTTATTGCGAGATAGAATTTGATCCTGTTATTGAACATTATTTGACCCCAGATCAGGCAACAAGTAATCCCGAGCTCAATCTACAAAGTCAACTTTTTTCGAGGCACTGCCCAGATCTTAGACCAGAAGTCTACGAGGCTTCTTTTTCTTCTGCTGCATCCACCCTGTGTTCTATTTCAGAACCGATTAATAGGTCTTCTGCTCTGAACAATGACGATGGGCATGCTTACTTTAGTTCAGGCTATATTGATTCCGGAGAATGTTATGGAGTATCGAATAGCGCATGCCAATCTTTACTATCCTCAGCACGGTGTCACGAAACCTCAAGTAAATCTCAGCGCAATCTTGATGAATTAGAGACGACGCCCATTGTGGATAAAGAGGATAGCGATTCTGATTCAGAGATATTTAGGGTAAAGCGGCCATCTTCTCTGAAGGCAGAGAAGAGAAATTTGAATGCTACCATGTCTTTCAAGCATTCGGACCAACAGGGGCATAAACGATTGAAGAAAGTTAATGAAGGAAGTAGCCCGTCCCAGCCAGTGGATTGCAGCAGAAGCAACGATTCAAGTAACAAAATGAGTCACCCGATGAAACGGAAATTTGAAGGTGAAAGATTGCTGAAGGACAAATTTGCAGGGGGAAATGGCATTCCCATTTCTATAAGGTATAAGAAGCTGGGCAATGAGGGAGTTGGTAGGGAGCGAGATCACCGCAGGAAAGATAGGTTCCCGCAGGCAATTAGGGAACGACCTCCTATAGAGATTGGGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCTTCATTCTTGAGCTTAGAGAGTCCCGGTTTTGCCTCTAAATGGTAA 2583 0.4293 MVERRLSLSKEARHGLELLKRKRLQRAKLITATETAIASTMTRSGGDALRASTSCGVRFHGNADVFSKRKVNKFETSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFLSGSNYTFRDFEKMANRVFEHRYSSAGCLPATFLEKEFWHEIACGQMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKVSRLPKSILRLLETAIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAPKTWYGIPGHAALDFERVVREHVYSKDILSNDGEDGAFDVLLGKTTLFPPNILLDNEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLNRMPLLPHEELVCKEAMLLHTNSELEVSDFPSADLSAHNCIKISFVNLIRFQHCARWLLMKSRACSSVFTHSHSTILCSLCKRDCYVAYVDCECHMHLVCLRHDVKALGFACGSQHTLYVREDISDLEAAAKRFEQEGGIVDEILKQTKGDNNMYSYPLSNMFQRAEANGYTPYCEIEFDPVIEHYLTPDQATSNPELNLQSQLFSRHCPDLRPEVYEASFSSAASTLCSISEPINRSSALNNDDGHAYFSSGYIDSGECYGVSNSACQSLLSSARCHETSSKSQRNLDELETTPIVDKEDSDSDSEIFRVKRPSSLKAEKRNLNATMSFKHSDQQGHKRLKKVNEGSSPSQPVDCSRSNDSSNKMSHPMKRKFEGERLLKDKFAGGNGIPISIRYKKLGNEGVGRERDHRRKDRFPQAIRERPPIEIGPKRLKVRGPSSFLSLESPGFASKW 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3884g00019 860 Pfam jmjN domain 89 121 IPR003349 -
Pral3884g00019 860 MobiDBLite consensus disorder prediction 810 837 - -
Pral3884g00019 860 FunFam Lysine-specific demethylase isoform A 83 432 - -
Pral3884g00019 860 MobiDBLite consensus disorder prediction 686 786 - -
Pral3884g00019 860 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 768 - -
Pral3884g00019 860 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Pral3884g00019 860 MobiDBLite consensus disorder prediction 753 771 - -
Pral3884g00019 860 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Pral3884g00019 860 Gene3D Cupin 88 444 - -
Pral3884g00019 860 SMART cupin_9 232 405 IPR003347 -
Pral3884g00019 860 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Pral3884g00019 860 MobiDBLite consensus disorder prediction 810 860 - -
Pral3884g00019 860 SUPERFAMILY Clavaminate synthase-like 170 421 - -
Pral3884g00019 860 MobiDBLite consensus disorder prediction 689 726 - -
Pral3884g00019 860 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Pral3884g00019 860 SMART JmjN_1 87 128 IPR003349 -
Pral3884g00019 860 MobiDBLite consensus disorder prediction 772 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3884g00019 Pral-Chr3884 122178 129711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3884g00019 85 423 JUMONJI Transcription Factor Family AT1G30810 36.908 2.89e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral3884g00019 JmjC 2.4e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3884g00019 - - gmx:100798611 1287.71