Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3881g00027 ATGTCTTGTTCTTCGTCATCATCCAGATCGCTTGTGTCTTCTATGGTTTCTGAAACCTCAGCCACACTTCAACAGCGACTTCAGTTCATTTTGCATAGCCGTACTACTGAGTGGTGGGTTTACATCATCTTCTGGCAAGCTTGGAAAGATGATGAGGGAAGCAGTACGAGGCGCCAAATCTTAAATTGGGCGGATGGCCACTTTCGTGGAACCAGAGAGTCCGAGTCCAAGGAAAACCAGACGAGGGATCAATGGCGAAGCCCTAATCGCTCGAGGAAGATGAGGTTGATTCCGAACCAGCACATGGAAGACGAAGGGCATATGACTGAGTTGGAATGGTTTTACACAGTATCGTTGAATAGATCATTCGCTGCCGGGGAAGACGTGGTGGGCCGTGCCTTCAGCTCAGCCACACATGTTTGGTTGTCCGCTGCAGCCGCCGCCTCCTCCTCCGGCGGCAGCCAGCTCCACGAGTGTGAGAGAGTTCGTGAAGCTTTTGCTCATGGAATCCAAACTCTGGTGTGCATTCCCATTCCTAATGGACTTGGAGTTCTTGAGTTGGCTTCTACTGACTTAATAACCCAAGATTGGAGCTTGATTCAATCGGTTAAATCAGTTTTCGAGTTTGACAACTTCATCAGCCCCAGCCCACCGGGTTTGCTTTCTTCTGAACCTTATTACCATCATTTCAAGAACGAAGATCTCACCGATTCTGAAGCTCTTTTCGGATCATCCTCATCCAAGCCTCGACCCACAAGAAAAAAGGGAAGAAATGACGATGCTGAGATGAAAGGACAAGAACTAATAATGCCTCTAAACCACGTAGAGGCCGAGAGGCAAAGAAGAGAGCGATTGAACCAAAGATTTTATGCTCTTCGTTCTGCTGTTCCCAATGTGTCCAAAATGGACAAAGCTTCTTTGCTCTCAGACGCAGTCACCTACATAAATCAACTCAGGGCCAAAGTTGAGGAACTAGAGGCCAGATTTAAGAAAACTACCACAGAAGAAGAAAAAGAAACTGCTAGAATAATGGATCATTGTTCGAGTTCTGAAGCGAGTTCGCTTGGAGTGGAAGTTAATATTGTGGGAACGGAGGCGATGATAAGGGTTCAGAGCTTAGATGTGAACCACCCAGCTGCCAGATTAATGGATGCTTTGAGACAACTTGATTTTCATGTTCATCATGCCAGCGTTTCAAGAGTCAAAGACCTAATGCTCCAAGACGTTGTCGTCAAGGTTCCCAGTAATTTCATGACTGCCCAGGGGATGAAGGATGCGATTCTACAACGTTTGCAGAACTAG 1302 0.4677 MSCSSSSSRSLVSSMVSETSATLQQRLQFILHSRTTEWWVYIIFWQAWKDDEGSSTRRQILNWADGHFRGTRESESKENQTRDQWRSPNRSRKMRLIPNQHMEDEGHMTELEWFYTVSLNRSFAAGEDVVGRAFSSATHVWLSAAAAASSSGGSQLHECERVREAFAHGIQTLVCIPIPNGLGVLELASTDLITQDWSLIQSVKSVFEFDNFISPSPPGLLSSEPYYHHFKNEDLTDSEALFGSSSSKPRPTRKKGRNDDAEMKGQELIMPLNHVEAERQRRERLNQRFYALRSAVPNVSKMDKASLLSDAVTYINQLRAKVEELEARFKKTTTEEEKETARIMDHCSSSEASSLGVEVNIVGTEAMIRVQSLDVNHPAARLMDALRQLDFHVHHASVSRVKDLMLQDVVVKVPSNFMTAQGMKDAILQRLQN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3881g00027 433 Gene3D - 271 335 IPR036638 GO:0046983
Pral3881g00027 433 Pfam Helix-loop-helix DNA-binding domain 273 319 IPR011598 GO:0046983
Pral3881g00027 433 SMART finulus 275 324 IPR011598 GO:0046983
Pral3881g00027 433 PANTHER MYC 12 430 IPR045084 GO:0003700|GO:0006355
Pral3881g00027 433 Coils Coil 308 342 - -
Pral3881g00027 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Pral3881g00027 433 MobiDBLite consensus disorder prediction 238 262 - -
Pral3881g00027 433 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 23 207 IPR025610 -
Pral3881g00027 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 331 IPR036638 GO:0046983
Pral3881g00027 433 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3881g00027 Pral-Chr3881 311459 312760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3881g00027 10 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.303 3.21e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3881g00027 bHLH-MYC_N 2.9e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3881g00027 - K13422 pcin:129310791 557.37