Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3874g00004 ATGGTTGCCGCCAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGGAAGTATACTCTGGGTTACAAAACGGTCCTCAAATCCCTTAGGAGCTCTAAAGGAAAACTGATTATCATTGCCAACAATTGTCCACCTCTGAGAAAGTCAGAAATAGAGTACTATGCCATGTTGGCTAAAGTTGGAGTTCACCATTACAATGGAAACAACGTTGATTTGGGCACCGCATGCGGCAAATATTTCAGAGTGTGCTGCCTCAGCATTATCGATCCTGGTACCTTGAGCTGTTTAGATCTAACATCAATATGGTGA 336 0.4405 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDPGTLSCLDLTSIW 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3874g00004 111 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Pral3874g00004 111 PANTHER RIBOSOMAL PROTEIN L30 1 103 IPR039109 GO:0003723
Pral3874g00004 111 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Pral3874g00004 111 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 104 IPR004038 -
Pral3874g00004 111 Gene3D - 2 107 IPR029064 -
Pral3874g00004 111 FunFam 60S ribosomal protein L30 2 107 - -
Pral3874g00004 111 SUPERFAMILY L30e-like 13 101 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3874g00004 Pral-Chr3874 17602 19435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3874g00004 1 100 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 89.000 4.17e-64 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3874g00004 K02908 - cave:132163741 205.297