Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3872g00011 ATGGCAGATGAATTTTCGGATTTGGACTGGATTCGCCATCATCTTCTTGGTGAGTTTTCGTCCTCAGAAACCTTCTTCTCCGATCTGTATCCTGTAAAACTCGAGGATTCTTCCTCGGAGTTTGATCTGAATCCGTGTGCCCCGGTGCAAAGTTTTGGCTTTGAAGATGTGGAGGTTTGGAGCCCCGTGTTGGCGGAGGTCGAAATGGAGAAGAAGCCCACGTCGCCTGAGACTGATGAGAAGTCCGTGTGCGGTGAGGCGATTATTCGGCGGTACAGGGGCGTTCGGAGGAGGCCGTGGGGCAAGTTTGCGGCGGAGATCCGTGATCCGACCCGCAAAGGGACACGGGTTTGGCTGGGGACGTTTGAGAGTGAGATTGATGCTGCGAGGGCTTATGACTGTGCTGCCTTCAGAATGAGGGGTCGAAGGGCAATATTGAACTTTCCTCTGGAGGCCGGCCAGTCTGAACCGACGCCGAACCGGTGTGGCCGGAAAAGGAGAAGACAAAGTTCAACGGCGGAGCTGTACCAAATTTCCACTGCCATTTAA 549 0.5392 MADEFSDLDWIRHHLLGEFSSSETFFSDLYPVKLEDSSSEFDLNPCAPVQSFGFEDVEVWSPVLAEVEMEKKPTSPETDEKSVCGEAIIRRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFESEIDAARAYDCAAFRMRGRRAILNFPLEAGQSEPTPNRCGRKRRRQSSTAELYQISTAI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3872g00011 182 MobiDBLite consensus disorder prediction 155 182 - -
Pral3872g00011 182 Pfam AP2 domain 91 141 IPR001471 GO:0003700|GO:0006355
Pral3872g00011 182 PRINTS Ethylene responsive element binding protein signature 131 151 IPR001471 GO:0003700|GO:0006355
Pral3872g00011 182 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Pral3872g00011 182 FunFam Ethylene-responsive transcription factor 2 90 151 - -
Pral3872g00011 182 CDD AP2 99 149 IPR001471 GO:0003700|GO:0006355
Pral3872g00011 182 Gene3D AP2/ERF domain 90 151 IPR036955 GO:0003700|GO:0006355
Pral3872g00011 182 ProSiteProfiles AP2/ERF domain profile. 91 149 IPR001471 GO:0003700|GO:0006355
Pral3872g00011 182 SMART rav1_2 91 155 IPR001471 GO:0003700|GO:0006355
Pral3872g00011 182 PANTHER DNA-BINDING DOMAIN 74 160 IPR044808 GO:0003700|GO:0009873
Pral3872g00011 182 SUPERFAMILY DNA-binding domain 91 151 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3872g00011 Pral-Chr3872 144675 145456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3872g00011 3 175 AP2-EREBP Transcription Factor Family AT5G07580 46.073 2.54e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3872g00011 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3872g00011 - - ccaj:109813158 180.644