Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3872g00010 ATGGGACTCCGATCAATCCGAATTTTAACGCTCTCCGTCATCTTCCTCGCCGTCATGGCAGCCGCCGCCGCCATCTCTCCTGGCGCTACTCTCTTAGCTTCCAACACCAATCAAAGATGGTCTTCTCCGAACAACACATTCTCCCTTTATTTCATTCCTTCCAACCCCCAAACTTCTCCTCCTACCTTCATCGCTGCCATCGTGTACTCCGGCGGCACTCCCGTCATCTGGTCCGCCGGTAATGGCTTGGCTGTGGACTCTGGCGGCTCCTTCCGGTTCCTTTCTACCGGAACCCTTCACCTCGTAAACGGGTCAGGGTCAATCGTTTGGGACTCCAGAACTTCAGATATGGGTGTCTCCTCCGCCACCCTACAAGCCGACGGCAACCTGGTGCTCTCAAATGGAACTGGCACCGTCTGGTCAACGTTCGACCATCCGACTGATACAATTGTTCCGTCTCAGAACTTCACTTCTGGTATGGTTTTGCGATCTGGATTGTACTCGTTTAATCTTATTCCAAGTGGAAATTTGACCCTTAAATGGAATGATAGTATAGAATACTGGAATCAGGGTTTGAATTCATCTGTGAATGTGAAGTTAAATTCACCGGTTTTGAGGTTGCAATCAATAGGGCTTTTGCAGCTCTATGATTCTAATCTTTCAACTCCAGCGGTTATTGCTTATAGCAGTGACTACGCTGAAGGTAGTGATGTGTTGAGAACTTTGAAGATAGATAGTGATGGGAACTTGAGGATTTACAGTTCTGCAAGAGGTAGTGGAACTGCAACTCCAAGATGGTCTGCTGTAGATCAATGTAAGGTTTTTGGTTACTGTGGGAGCTATGGTATTTGCAGTTACAATGATTCAGACCCTATCTGTGGTTGCCCGTCTCAGAATTTTGAGATGATTGATCCCAGTAACAGCCGAAAAGGATGCAGAAGGAAGGTGAATCTTGATGATTGTCCTGGAAGTGCAACTATGTTGCAATTGGAACATGCTCAGTTCTTGACTTATCCGCCTGAGCTGAGTACACAAGTCTTCTTCATTGGTATATCAGCTTGTAGAGGTAATTGTCTGGCGGGTTCCTGCTTTGCTTCTACTTCATTATCAGATGGCACAGGTCAGTGTTACATAAAAACATCGGATTTTATCAGTGGGTATCAAAGTCCTGCACTGCCTAGCACTTCATATGTCAAGGTTTGTGGACCAGTGGCTCCAAATCCTCCAGCTTCCTTGGATGGAACTGAGAAGAAGCATCGTGGAAGGTTACCAGCTTGGGTTGTCGCTATAGTGGTTTTGGGTACCCTTTTAGCTTTGATTGCCTTTGAAGGTGGCTTGTGGTTCTGGTGTTGTAGGAACAGAACAATATTAGGTGGGTTGTCTGCACAATATGCTCTTCTTGAGTATGCTTCTGGTGCACCAGTCCAGTTCTCATACAAGGATCTGCAGCGGGCAACAAAAGGGTTTAAAGAGAAGCTTGGGGCTGGGGGTTTTGGTGCTGTGTACAGGGGAGTCCTTGCTAATAAATCTGTTGTTGCAGTTAAGCAACTTGAGGGCATTGAGCAAGGTGAGAAACAATTTAGGATGGAAGTAGCTACTATAAGCAGCACTCATCATCTCAATTTGGTGAGGCTGATTGGTTTCTGCTCGGAGGGGCGCCACAGGCTTTTAGTGTATGAGTTCATGAAAAATGGTTCGCTTGATAATCTTCTGTTTCTGACCGAAGAACAGTCAGGAAAATTGTTGAATTGGGAGTATCGCTTCAACATTGCCCTAGGCACTGCAAGGGGCATCACATATCTTCACGAGGAATGTCGAGACTGCATTGTCCATTGTGATATAAAACCTGAAAACATTCTGTTGAACGAGAATTACATTGCGAAAGTCTCGGATTTCGGCCTTGCCAAGCTTGTAAATCCAAAAGACCACAGGCACCGAACCCTGACCAGTGTGAGAGGAACACGAGGGTATTTAGCTCCTGAATGGCTAGCTAATCTTCCCATAACTTCCAAATCTGATGTTTACAGTTATGGTATGGTTTTGCTGGAGATTGTGAGTGGAAGGAGGAACTTTGAAATGCTCGATGACAGAAACAGGAAGAAGTTCTCCAACTGGGCTTATGAAGAGTTTGAGAAAGGCAACATCATGGGAATAGTTGACAGAAGACTGAATGACCAAGTTGATATGGAGCAAGTACAAAGGGCAATTCAAGTAAGCTTCTGGTGCATCCAGGAGCATCCATCTCAGAGGCCAACAATGGGTCGAGTTGTGCAAATGCTCGAAGGGATAACTGAGATTGAGAAGCCGCCCGCACCGAAAGCCTTCATAGAAGGATCTGGTGGTGGAACAAGCACTTACTTGAGCAGCAATACTAGTGCGTTCTCCACAGTTGCTGCCTCAGCCCCTGGTACTACCTCATCCTCATTCCAGAACAGTGGTGCTTCAAGTTTGACTCCAGGAAGGAAAATTGAGAAGGCAACTTCCTCTCTTCTACAACCAGACCAATTGTAA 2511 0.4608 MGLRSIRILTLSVIFLAVMAAAAAISPGATLLASNTNQRWSSPNNTFSLYFIPSNPQTSPPTFIAAIVYSGGTPVIWSAGNGLAVDSGGSFRFLSTGTLHLVNGSGSIVWDSRTSDMGVSSATLQADGNLVLSNGTGTVWSTFDHPTDTIVPSQNFTSGMVLRSGLYSFNLIPSGNLTLKWNDSIEYWNQGLNSSVNVKLNSPVLRLQSIGLLQLYDSNLSTPAVIAYSSDYAEGSDVLRTLKIDSDGNLRIYSSARGSGTATPRWSAVDQCKVFGYCGSYGICSYNDSDPICGCPSQNFEMIDPSNSRKGCRRKVNLDDCPGSATMLQLEHAQFLTYPPELSTQVFFIGISACRGNCLAGSCFASTSLSDGTGQCYIKTSDFISGYQSPALPSTSYVKVCGPVAPNPPASLDGTEKKHRGRLPAWVVAIVVLGTLLALIAFEGGLWFWCCRNRTILGGLSAQYALLEYASGAPVQFSYKDLQRATKGFKEKLGAGGFGAVYRGVLANKSVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNLLFLTEEQSGKLLNWEYRFNIALGTARGITYLHEECRDCIVHCDIKPENILLNENYIAKVSDFGLAKLVNPKDHRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGRRNFEMLDDRNRKKFSNWAYEEFEKGNIMGIVDRRLNDQVDMEQVQRAIQVSFWCIQEHPSQRPTMGRVVQMLEGITEIEKPPAPKAFIEGSGGGTSTYLSSNTSAFSTVAASAPGTTSSSFQNSGASSLTPGRKIEKATSSLLQPDQL 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3872g00010 836 CDD STKc_IRAK 493 763 - -
Pral3872g00010 836 Gene3D Phosphorylase Kinase; domain 1 460 561 - -
Pral3872g00010 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 191 IPR036426 -
Pral3872g00010 836 Gene3D - 18 145 IPR036426 -
Pral3872g00010 836 ProSiteProfiles Bulb-type lectin domain profile. 147 265 IPR001480 -
Pral3872g00010 836 SMART blect_4 31 146 IPR001480 -
Pral3872g00010 836 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Pral3872g00010 836 SMART serkin_6 487 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3872g00010 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 145 - -
Pral3872g00010 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 562 770 - -
Pral3872g00010 836 Gene3D Transferase(Phosphotransferase) domain 1 562 772 - -
Pral3872g00010 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 146 268 - -
Pral3872g00010 836 SUPERFAMILY Protein kinase-like (PK-like) 470 761 IPR011009 -
Pral3872g00010 836 Pfam D-mannose binding lectin 85 157 IPR001480 -
Pral3872g00010 836 Gene3D - 146 268 IPR036426 -
Pral3872g00010 836 PANTHER OS07G0415500 PROTEIN 8 772 - -
Pral3872g00010 836 Pfam Protein kinase domain 490 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3872g00010 836 FunFam S-receptor-like serine/threonine-protein kinase 461 561 - -
Pral3872g00010 836 MobiDBLite consensus disorder prediction 799 836 - -
Pral3872g00010 836 Pfam S-locus glycoprotein domain 233 296 IPR000858 GO:0048544
Pral3872g00010 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Pral3872g00010 836 ProSiteProfiles Protein kinase domain profile. 487 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3872g00010 836 PIRSF SRK 2 817 IPR024171 GO:0004674
Pral3872g00010 836 ProSiteProfiles Bulb-type lectin domain profile. 16 145 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3872g00010 Pral-Chr3872 135223 138000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3872g00010 460 770 Receptor kinase-like Gene Family AT5G20050 44.923 1.94e-82 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pral3872g00010 Pkinase 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3872g00010 - - qsa:O6P43_004111 1266.91