Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3872g00005 ATGGCTGCTGCTTCATCCGGGAATTCCATTTCTACGTCTTCCTCTGCTTTCTCTCACAAACCGTTGGAATTCTCCCCCGATTCCCCCCAGAAAATCTCTCTCACCCCTGATCAGGTCAAGCACTGCTCCGAAGCGCTGACCATCCTCACGAAGAAGCTTCAGACGCCGTACAGTATCGGTCAAGAGTTTGCTCACTTGCAGGCCAATAGGATAACACCGAGTGAGATGAGGAGAAGATGCACTGTTGCTCTAAATGACGTAAATGTGAGCAAAAATCGGTATACAGATGTCCTACCATTTGACAATAACAGAATTGTTCTTGAATCAAGTTCAGATTATAGACCTGCAGCCAAGGGATACATCAATGCAAGCTTTGTCTCGACCTCTTCCTCTGGAAGTGTTTCTCAGTTTATAGCTACACAAGGTCCCCTACCACATACTTATGAGGATTTCTGGGAAATGGTGATACAATACCGTTGCCCTGCTGTTGTGATGCTCACTAGACTTGTCGACAATTATAAGATGGTAAAATGTGGAGATTATTTTCAAGCTGAAGATGGACCTAGAGAGTTAGGCAATATCTCTATTATGGGCAAATGGATGAAAACTACTGAAACATCACTGGAACTGCGCCATTTGGAGGTGCAGCATAGAGAGGAAGAAGAGCCGCCCTTGCCTGTTTTGCATATTCAGTATCCTGAATGGCCTGATCATGGAGTTCCCAAAGATACTTATGCTGTGCGTGAAATTTTGAAAAGATTGTACCATATACCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGCAGGACTGGAACATACTGTGCAATTCACAACACAATTCAGAGAATCCTTGCTGGTGATATGTCTGCCTTGGATCTTGGTAATACCATAGCTGTCTTCAGGTCACAGCGTATTGGAATGGTTCAGACACAGGATCAGTACTTTTTCTGCTATAAAGCTATCTTAGAGGAACTGGAAGACCTTGTTTCTCATCAGCAATGA 1017 0.4435 MAAASSGNSISTSSSAFSHKPLEFSPDSPQKISLTPDQVKHCSEALTILTKKLQTPYSIGQEFAHLQANRITPSEMRRRCTVALNDVNVSKNRYTDVLPFDNNRIVLESSSDYRPAAKGYINASFVSTSSSGSVSQFIATQGPLPHTYEDFWEMVIQYRCPAVVMLTRLVDNYKMVKCGDYFQAEDGPRELGNISIMGKWMKTTETSLELRHLEVQHREEEEPPLPVLHIQYPEWPDHGVPKDTYAVREILKRLYHIPPNLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLGNTIAVFRSQRIGMVQTQDQYFFCYKAILEELEDLVSHQQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3872g00005 338 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 45 332 IPR029021 -
Pral3872g00005 338 PRINTS Protein tyrosine phosphatase signature 263 281 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 PRINTS Protein tyrosine phosphatase signature 137 157 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 PRINTS Protein tyrosine phosphatase signature 312 322 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 PRINTS Protein tyrosine phosphatase signature 119 126 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 PRINTS Protein tyrosine phosphatase signature 225 242 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 PRINTS Protein tyrosine phosphatase signature 296 311 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 Gene3D Protein tyrosine phosphatase superfamily 35 332 IPR029021 -
Pral3872g00005 338 ProSiteProfiles PTP type protein phosphatase domain profile. 59 329 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 SMART PTPc_3 58 331 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 ProSitePatterns Tyrosine specific protein phosphatases active site. 266 276 IPR016130 GO:0016311|GO:0016791
Pral3872g00005 338 Pfam Protein-tyrosine phosphatase 88 328 IPR000242 GO:0004725|GO:0006470
Pral3872g00005 338 FunFam Tyrosine-protein phosphatase non-receptor type 12 36 337 - -
Pral3872g00005 338 MobiDBLite consensus disorder prediction 1 21 - -
Pral3872g00005 338 MobiDBLite consensus disorder prediction 1 31 - -
Pral3872g00005 338 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 248 320 IPR000387 GO:0016311|GO:0016791
Pral3872g00005 338 SMART ptp_7 226 328 IPR003595 -
Pral3872g00005 338 CDD PTPc_plant_PTP1 120 323 - -
Pral3872g00005 338 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 51 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3872g00005 Pral-Chr3872 67144 73299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3872g00005 37 335 Protein tyrosine phosphatase (PTP) family AT1G71860 71.572 8.96e-167 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3872g00005 - - qsa:O6P43_004106 546.969