Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3872g00003 ATGGCTGCTTCTGTTTCAACTTCTTCCTCTGCTTTTTCTCACAAACCGTGGGATCCCTCCTCCGATTCTCCCCCGAGAATTTCTCTCACCCCTCATCAGGTCAGGGACTGTACTGAAGCGCTGGGCAGCTTTAGGGAGAGAACGCCGGAGATGATCGATCAAGAGTTCGCCCACTTGGAGGCCAATGTGATAACACTGAGTGAGCTGAGGAGAAGATGCACCGTAGCTCTAAATGACGTAAATCTGAACAAAAATCGGTATCCGGAGAATGTCCTGCCATTTGACGATAACAGGGTCGTTCTGGAATCATGTACAGATGATAGACCCATGGCCATGGGATATATCAATGCAAGCTTTCTCTCGACCTCTTCAGCTGAGAGTGTTTCTCAGTTTATAGCTACACAAGGTCCATTGCCACATACTTGTGAGGATTTCTGGGAAATGGTAATCCAGTGCCGCTGCCCCGTCATTGTGAATCTCACTGCGCTTGTTGAACATAACAAGATTGTAAAATGCCACGATTATTTTCAAGCTGAGGGTGGACCTTTAAAGTTTGGTAATATCTCTGTTGTTTGTGAATGGATGAAGACTATTGAATACTCATTGGTATTGCGCCATTTGAAGGTGCATAGAAAGGAAGATCCGCCCTTGTCTGTTTTGCACATTCATTATCCTCAGTGGCCTGACTATGGAGTCCCCAACGATACACATGCTGTGCGCGCAATTTTTAAGAGATTGTACCATTTACCACCAAAACTTGGCCCAATCGTGGTGCACTGCAGTGCAGGTATTGGCAGAACTGGAGCATATTGTGCTGTTCACAATACAATTCAGAGAATCCTTGTAGGGGATAAGTCTGCCTTGGATCTTCGTAATACCATATCTGTCTTCAGGTCGCAGCGATATGGAATGGCTCAGAAACAGAGCCAGTACAATTTCTGCTATGAAGCTACTATAGAGGCACTGGATGAGCTTGTCTCTAATCATCAGCAATGA 996 0.4558 MAASVSTSSSAFSHKPWDPSSDSPPRISLTPHQVRDCTEALGSFRERTPEMIDQEFAHLEANVITLSELRRRCTVALNDVNLNKNRYPENVLPFDDNRVVLESCTDDRPMAMGYINASFLSTSSAESVSQFIATQGPLPHTCEDFWEMVIQCRCPVIVNLTALVEHNKIVKCHDYFQAEGGPLKFGNISVVCEWMKTIEYSLVLRHLKVHRKEDPPLSVLHIHYPQWPDYGVPNDTHAVRAIFKRLYHLPPKLGPIVVHCSAGIGRTGAYCAVHNTIQRILVGDKSALDLRNTISVFRSQRYGMAQKQSQYNFCYEATIEALDELVSNHQQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3872g00003 331 Pfam Protein-tyrosine phosphatase 81 319 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 SMART PTPc_3 51 323 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 18 323 IPR029021 -
Pral3872g00003 331 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 233 312 IPR000387 GO:0016311|GO:0016791
Pral3872g00003 331 ProSitePatterns Tyrosine specific protein phosphatases active site. 258 268 IPR016130 GO:0016311|GO:0016791
Pral3872g00003 331 ProSiteProfiles PTP type protein phosphatase domain profile. 52 321 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 Gene3D Protein tyrosine phosphatase superfamily 26 327 IPR029021 -
Pral3872g00003 331 SMART ptp_7 218 320 IPR003595 -
Pral3872g00003 331 MobiDBLite consensus disorder prediction 1 28 - -
Pral3872g00003 331 PRINTS Protein tyrosine phosphatase signature 288 303 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 PRINTS Protein tyrosine phosphatase signature 113 120 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 PRINTS Protein tyrosine phosphatase signature 217 234 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 PRINTS Protein tyrosine phosphatase signature 304 314 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 PRINTS Protein tyrosine phosphatase signature 131 151 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 PRINTS Protein tyrosine phosphatase signature 255 273 IPR000242 GO:0004725|GO:0006470
Pral3872g00003 331 FunFam Tyrosine-protein phosphatase non-receptor type 12 31 329 - -
Pral3872g00003 331 MobiDBLite consensus disorder prediction 1 30 - -
Pral3872g00003 331 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 34 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3872g00003 Pral-Chr3872 56539 63032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3872g00003 33 327 Protein tyrosine phosphatase (PTP) family AT1G71860 60.201 5.35e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3872g00003 - - qsa:O6P43_004107 439.113