Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3872g00001 ATGATCGATCAAGAGTTCGCCCACTTGGAGGCCAATGTGATAACACTGAGTGAGCTGAGGAGAAGATGCACCGTAGCTCTAAATGACGTAAATCTGAACAAAAATCGGTATCCGGAGAATGTCCTGCCATTTGACGATAACAGGGTCGTTCTGGAATCATGTACAGATGATAGACCCATGGCCATGGGATATATCAATGCAAGCTTTCTCTCGACCTCTTCAGCTGAGAGTGTTTCTCAGTTTATAGCTACACAAGGTCCATTGCCACATACTTGTGAGGATTTCTGGGAAATGGTAATCCAGTGCCGCTGCCCCGTCATTGTGAATCTCACTGCGCTTGTTGAACATAACAAGATTGTAAAATGCCACGATTATTTTCAAGCTGAGGGTGGACCTTTAAAGTTTGGTAATATCTCTGTTGTTTGTGAATGGATGAAGACTATTGAATACTCATTGGTATTGCGCCATTTGAAGGTGCATAGAAAGGAAGATCCGCCCTTGTCTGTTTTGCACATTCATTATCCTCAGTGGCCTGACTATGGAGTCCCCAACGATACACATGCTGTGCGCGCAATTTTTAAGAGATTGTACCATTTACCACCAAAACTTGGCCCAATCGTGGTGCACTGCAGTGCAGGTATTGGCAGAACTGGAGCATATTGTGCTGTTCACAATACAATTCAGAGAATCCTTGTAGGGGATAAGTCTGCCTTGGATCTTCGTAATACCATATCTGTCTTCAGGTCGCAGCGATATGGAATGGCTCAGAAACAGAGCCAGTACAATTTCTGCTATGAAGCTACTATAGAGGCACTGGATGAGCTTGTCTCTAATCATCAGCAATGA 846 0.4409 MIDQEFAHLEANVITLSELRRRCTVALNDVNLNKNRYPENVLPFDDNRVVLESCTDDRPMAMGYINASFLSTSSAESVSQFIATQGPLPHTCEDFWEMVIQCRCPVIVNLTALVEHNKIVKCHDYFQAEGGPLKFGNISVVCEWMKTIEYSLVLRHLKVHRKEDPPLSVLHIHYPQWPDYGVPNDTHAVRAIFKRLYHLPPKLGPIVVHCSAGIGRTGAYCAVHNTIQRILVGDKSALDLRNTISVFRSQRYGMAQKQSQYNFCYEATIEALDELVSNHQQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3872g00001 281 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 262 IPR000387 GO:0016311|GO:0016791
Pral3872g00001 281 SMART PTPc_3 1 273 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 SMART ptp_7 168 270 IPR003595 -
Pral3872g00001 281 Pfam Protein-tyrosine phosphatase 31 269 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 ProSiteProfiles PTP type protein phosphatase domain profile. 2 271 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 16 273 - -
Pral3872g00001 281 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 273 IPR029021 -
Pral3872g00001 281 PRINTS Protein tyrosine phosphatase signature 81 101 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 PRINTS Protein tyrosine phosphatase signature 63 70 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 PRINTS Protein tyrosine phosphatase signature 254 264 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 PRINTS Protein tyrosine phosphatase signature 205 223 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 PRINTS Protein tyrosine phosphatase signature 167 184 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 PRINTS Protein tyrosine phosphatase signature 238 253 IPR000242 GO:0004725|GO:0006470
Pral3872g00001 281 FunFam Tyrosine-protein phosphatase non-receptor type 12 1 279 - -
Pral3872g00001 281 Gene3D Protein tyrosine phosphatase superfamily 1 277 IPR029021 -
Pral3872g00001 281 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3872g00001 Pral-Chr3872 56032 80894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3872g00001 2 277 Protein tyrosine phosphatase (PTP) family AT1G71860 61.871 1.50e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3872g00001 - - qsa:O6P43_004107 399.823