Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3870g00030 ATGCAGGCAAAAGTTTCCTCTAATCCACCCTCTCTTCCAGATTTCACTTTGCAGCATAATTGTCAACAGAGGTGGGAAGATCCCTCTATGTCAGATTACAGTATCCGGATGGAAGCCCTGTTTAAAGAATTCAACCAAGCCTGTGGAGCCCAGTTTTTGCTTCCGCGTGATTCCAGCAATGAGATCAAGATCCCTAATCAAGAAAGTTGTCAGATTGGCGACACATCACGAACCGGTAAACTCCAAGATTGGGATCCTACCATAATGTTGGAAAATCTTTCTTTCCTGGAAGATAAGATTCATCAGCTCCAGGGTTTGGTGCATTTGATTGTTGATCAGAAAGGTCAACAATTTGGACAACCTGATGAACTTATAAGTCAAGAGAAGCAGCTTGTCACTGCAAATCTGACATCAATTATTGTTCAATTGATCTCTACAGCTGGAAGTCTTCTTCCTTCTGTCAGGCTTAATTCAAATGCCAGTTCATCTGCCGGACAGCATGGCCAGATTCCTGGTGTTACTTTTCCTTCTGCATTGGATCTTAGTAGTAGTATCCCACCACAACATAATATCAGAGACAAAAGACCTGAACAGTCCAACCAGGCTGATCCTACAAATATGTGTGAAATGGAGCAAAACCACGTGGAAGAACATGAATCAAAAGATGAAGAGGATGTGGAGGAAGGCGAGAACCTTCCGCCGGGTTCCTTTGAGATTTTACAGCTAGAAAAAGAAGAAATCCTTGCTCCTCATACACATTTCTGTACAATATGTGGAAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGATGAGTATAAAACCCCGGAAGCGCTAGCAAAACCTAACAAAGAATCTGTGTCTGAACCAAAGCTCATAAAGAGATATTCCTGTCCCTACCGTGGCTGCAAGCGTAATAAGGATCACAAAAAGTTTCAACCTCTAAAGACTATTTTATGTGTGAAAAACCATTACAAGAGAAGTCACTGTGACAAGAGTTACATTTGCAGCAGGTGCCACACCAAGAAATTTTCGGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTATGTTCATGTGGCACAACATTCTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTGTTTCAAGGCCATACACCAGCAATACCCTTGGATGAATCAAAAGCACCAGCTGGGCTAGCTGACATGGAAATCAAGGAGAACAATAATAATAATAACGGAGGAAGCATTAACTTGAGCTTTGGATCAAATGCTTCTTGTGAAAATGGAATTCAAAACATTATGGATGTGAAAGGTATTGCTGATGATCCTATCAGTTACCTCTCATCATTGAACTTTGAAACCTGTAACTTCGGTGAATTCAATGATTTTCCTCGACCCCCGTTTGACGACGCCGAAGGCTCATTTCCTTTTCTCATGTCCGAATCCTTCAATTATTCTCCTAAATCTGGGGGAGCAGCAGGTTCTGACAATCTGGTGTGA 1524 0.4199 MQAKVSSNPPSLPDFTLQHNCQQRWEDPSMSDYSIRMEALFKEFNQACGAQFLLPRDSSNEIKIPNQESCQIGDTSRTGKLQDWDPTIMLENLSFLEDKIHQLQGLVHLIVDQKGQQFGQPDELISQEKQLVTANLTSIIVQLISTAGSLLPSVRLNSNASSSAGQHGQIPGVTFPSALDLSSSIPPQHNIRDKRPEQSNQADPTNMCEMEQNHVEEHESKDEEDVEEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLIKRYSCPYRGCKRNKDHKKFQPLKTILCVKNHYKRSHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPAGLADMEIKENNNNNNGGSINLSFGSNASCENGIQNIMDVKGIADDPISYLSSLNFETCNFGEFNDFPRPPFDDAEGSFPFLMSESFNYSPKSGGAAGSDNLV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3870g00030 507 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Pral3870g00030 507 MobiDBLite consensus disorder prediction 159 234 - -
Pral3870g00030 507 SMART c2h2final6 253 275 IPR013087 -
Pral3870g00030 507 SMART c2h2final6 340 362 IPR013087 -
Pral3870g00030 507 SMART c2h2final6 302 335 IPR013087 -
Pral3870g00030 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 280 IPR013087 -
Pral3870g00030 507 SUPERFAMILY beta-beta-alpha zinc fingers 252 277 IPR036236 -
Pral3870g00030 507 Gene3D Classic Zinc Finger 236 308 - -
Pral3870g00030 507 MobiDBLite consensus disorder prediction 159 189 - -
Pral3870g00030 507 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 71 471 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3870g00030 Pral-Chr3870 217774 220366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3870g00030 221 504 C2H2 Transcription Factor Family AT1G34370 70.242 1.13e-144 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3870g00030 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3870g00030 - - pcin:129292903 686.026