Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3870g00015 ATGACATCACCCCAGTTTTCTGAGAGATCTTCGATGGCGGATATGGAATCATGTGTCCCACCAGGATTTAGATTTCATCCAACAGAGGAAGAACTTGTAGGATATTACCTCAAGAGAAAGATAAACTCACTCAAAATCAACGTAGATGTCATTGTCGAGCTAGATCTCTACAAAATGGAACCATGGGACATACAAGATAGATGCAAGCTAGGATATGAGGAGCAGAACGAGTGGTATTTTTTCAGCCACAAGGACAAGAAGTATCCAACAGGGACAAGAACGAATAGGGCGACAGCGGCAGGATTCTGGAAAGCAACAGGGAGGGACAAGGCAGTGATGTCGAAGAACAAGATCATAGGCATGAGGAAGACTCTGGTGTTCTACCAGGGACGAGCCCCTAATGGCAGAAAATCTGACTGGATCATGCATGAATATCGCCTCCAATCTTCTGAACATGCCCCTCCTCAGGAGGAAGGATGGGTAGTGTGCAGAGCATTCAAAAAGCCAAGTCCTAGTCATTTGAGGCCAGGTTTTGAAGCACAGTGCTATTTCAGAGATCAGATCAGCAGCCATGGAAGGACCTTCTCTTCATTTTCTGACATTCTGAATCAAACCCATCATTTTCTCAATACTACTCATCATCCTAGTAACTCTAACTCTCAAGGTATAACCCTAAGTCCTCATCATCACCAAGCTTTAACCAGTTTGGATCAGCAGCATCAGAACCAACAAGTTCTTGATCTTCCTCAACTAGATAGCCCTAGTCTGGGAATAAGATCATCATCAGATAACTACGGTGGCCAAAACAACGTTAATATTGGGGAAGAATATTACAGTGATGACGTGGAAAGCTTGGACCAGTTGTTTGCTTCAAATCTGACAGAGACGACTTCTGCTGCATCTGATGCTTTCTTAGCACACTCGAACTTTCCCATGAATATGATGCTCCATAACAATGAACTAGTAATACCTCACAATCAAGCAAGCGAAGCCCTAGGATTATGCTTTCCTGATTCATAG 1020 0.4353 MTSPQFSERSSMADMESCVPPGFRFHPTEEELVGYYLKRKINSLKINVDVIVELDLYKMEPWDIQDRCKLGYEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNKIIGMRKTLVFYQGRAPNGRKSDWIMHEYRLQSSEHAPPQEEGWVVCRAFKKPSPSHLRPGFEAQCYFRDQISSHGRTFSSFSDILNQTHHFLNTTHHPSNSNSQGITLSPHHHQALTSLDQQHQNQQVLDLPQLDSPSLGIRSSSDNYGGQNNVNIGEEYYSDDVESLDQLFASNLTETTSAASDAFLAHSNFPMNMMLHNNELVIPHNQASEALGLCFPDS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3870g00015 339 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Pral3870g00015 339 ProSiteProfiles NAC domain profile. 19 168 IPR003441 GO:0003677|GO:0006355
Pral3870g00015 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 254 - -
Pral3870g00015 339 Pfam No apical meristem (NAM) protein 20 147 IPR003441 GO:0003677|GO:0006355
Pral3870g00015 339 SUPERFAMILY NAC domain 9 168 IPR036093 GO:0003677|GO:0006355
Pral3870g00015 339 FunFam NAC domain-containing protein 28 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3870g00015 Pral-Chr3870 86941 91774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3870g00015 15 256 NAC Transcription Factor Family AT1G71930 65.041 6.30e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral3870g00015 NAM 6.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3870g00015 - - gmx:100811057 400.593