Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3868g00002 ATGAGAACGATGAATCTTCTTGTGTTTTTGTTATTCTCTGTAACGGCTTCATGCTATATGGCGGTGGCCAAGGTGGTGCTGATTGGGAACAACGTTACTCTATCCTTCGACGACATTGAAGCTAATTTTGCTCCAGCGATGAAAGGTTCTGGAGAATGCGGGGTCTTGTATATTGCAGAGCCGGTTGACGCATGTACAGAACTGACAAATAAAGTTGAACCGCTTTCAAATACAAGTTCACCTTTTGTTTTAATAATTAGAGGGGGGTGCAGCTTTGAAGACAAAGTCAGGAGAGCACAAAAGGCTGGCTTTAAAGCCGCAATTGTCTATGACAATGAAGATGATGGTGTCTTAGTTTCAATGGCAGGAAATTCGGGGGGTATAAAAATACATGCGGTATTCGTAACTAAAGCCTCAGGTGAAATACTGAAAAGATATGCTGGACTGACTAACATTGAAGTGTGGCTAATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTACTAGCTATGTCAGCAGTTCTGGCTACTTGCTTCTTTGTCCGGAGGCATCGCATACGAAGAGAAAGGCCTCAAGCTTCTCGTGTTCGTGAGTTCCATGGAATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACTGCTGTTTTAGAGGATAATTGTACATCAATGACATGTGCAATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTACCCTGCTGTCACAAGTTTCATGCTGCTTGTGTGGATTCTTGGCTTACGTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCAAGGACTGGTCTAAGTGATCCTCCACCTTCAGAATCCACGCCGTTGCTTTCATCTGGCCCAGCATCTGGAGCATCATCGTTAGCGTCATCTGTGAGATCATCATTAGCATCATCTTCTGCAATACAAATTGGTCGGTCATCATCACGGTCCCCATCTGTTTCTCGGGACCATTCTGTGGCTAGTACTCCCTACATTCAGCCATCATTTAGGTCCCATCAGCAATCTCCCTTTATGAGTGTCAGTCGAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCAAGCATCTCATTTGAATTCTCCACATTCCATGGGTTACCCATCGATGTCATCAATGAACTCAAGGTACTTGTCTCCACATATTCGAAGTCCAAGCAATGTTTCAGCAAGTTATCTTGGTTCTTCTAGTCATCGTCATCACCCACTTCGTTATAGCGGGTCAGCTGCGAGTTTTTCTCCATTTGCTTCTGCCCAGTCCCTTCCAGAATGCTGA 1335 0.439 MRTMNLLVFLLFSVTASCYMAVAKVVLIGNNVTLSFDDIEANFAPAMKGSGECGVLYIAEPVDACTELTNKVEPLSNTSSPFVLIIRGGCSFEDKVRRAQKAGFKAAIVYDNEDDGVLVSMAGNSGGIKIHAVFVTKASGEILKRYAGLTNIEVWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSMTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLSDPPPSESTPLLSSGPASGASSLASSVRSSLASSSAIQIGRSSSRSPSVSRDHSVASTPYIQPSFRSHQQSPFMSVSRSSVDLRNASQRSQASHLNSPHSMGYPSMSSMNSRYLSPHIRSPSNVSASYLGSSSHRHHPLRYSGSAASFSPFASAQSLPEC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3868g00002 444 MobiDBLite consensus disorder prediction 349 401 - -
Pral3868g00002 444 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Pral3868g00002 444 CDD PA_C_RZF_like 9 164 IPR044744 -
Pral3868g00002 444 SUPERFAMILY PA domain 81 158 IPR046450 -
Pral3868g00002 444 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 159 292 - -
Pral3868g00002 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Pral3868g00002 444 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 195 282 - -
Pral3868g00002 444 SUPERFAMILY RING/U-box 228 289 - -
Pral3868g00002 444 SMART ring_2 235 276 IPR001841 -
Pral3868g00002 444 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Pral3868g00002 444 Pfam PA domain 63 143 IPR003137 -
Pral3868g00002 444 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 23 157 - -
Pral3868g00002 444 Pfam Ring finger domain 234 277 IPR001841 -
Pral3868g00002 444 Gene3D - 17 156 - -
Pral3868g00002 444 MobiDBLite consensus disorder prediction 283 304 - -
Pral3868g00002 444 MobiDBLite consensus disorder prediction 286 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3868g00002 Pral-Chr3868 7302 13522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3868g00002 23 443 C3H Transcription Factor Family AT1G22670 49.306 5.55e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3868g00002 K15692 - gmx:100791248 676.781