Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3867g00008 ATGGGGAGGGGGAAGATAGAGATAAAGAGGATAGAGAACACAACGAATCGACAGGTGACATTCTGCAAAAGAAGGAATGGGCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTTCCCTCATCGTCTTCTCCAATCGTGGTCGTCTCTATGAGTACTCCAACAACAACATTAGGTCAACTATTGAGAGGTATAAAAAGGCATGTTCAGATCATTCAAGTACTAGCTCTCCCACTGAAATCAATGCCCAGTATTATCAACAAGAATCTGCAAAGCTACGACAACAGATTCAGATGCTGCAAAGTTCTAACAGGCATTTGATGGGTGATGCCTTGAGCAATCTGAATGTGAAGGAGCTGAAGCAGCTGGAGAATAGACTTGAACGAGGCCTCTCTAGAATCAGATCCAAAAAGCACGAGATGCTGCTGGCAGAAATCGAATACATGCAGAAGAAGGAAATTGAGCTTGAAAATGAAAACCTTTGTATTCGAACCAAGGTACAAATCTATGTAATTTATTATTCGTTATTTATTTTATGGAAATATGAGAATGAATATATAAATGAGCAGATAGCAGAAGTGGAGAGGGCAGAAGAAGAACAGATGGCAACAGGAGGGCAGGATCTGAGTGCCATTCAGGCTTTGGCTTCTCGAAATTACTTCATTCACCCTCTTCATCCTTCTCCTTCTCACAACAAGAATCTTCGCCTTGGGTAA 729 0.4129 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSNRGRLYEYSNNNIRSTIERYKKACSDHSSTSSPTEINAQYYQQESAKLRQQIQMLQSSNRHLMGDALSNLNVKELKQLENRLERGLSRIRSKKHEMLLAEIEYMQKKEIELENENLCIRTKVQIYVIYYSLFILWKYENEYINEQIAEVERAEEEQMATGGQDLSAIQALASRNYFIHPLHPSPSHNKNLRLG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3867g00008 242 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Pral3867g00008 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3867g00008 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pral3867g00008 242 Coils Coil 121 144 - -
Pral3867g00008 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral3867g00008 242 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3867g00008 242 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral3867g00008 242 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Pral3867g00008 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3867g00008 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Pral3867g00008 242 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3867g00008 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral3867g00008 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3867g00008 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3867g00008 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3867g00008 Pral-Chr3867 46818 60414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3867g00008 1 229 MADS-box Gene Family AT4G09960 68.831 5.08e-107 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3867g00008 K-box 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3867g00008 K09264 - gmx:100301905 328.176