Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3867g00001 ATGTCTTCCGCTAATCCTTATGAAATCATTGACGACGGCGACGACGGCGAAGCTTTTGATTGGGATGCTGCTGCACGAAAAATCGACGTCGCTTGCCAAGTCACGAAGCCCACCACTTTACTTGTTGGTGATACTTCCAATTCGCGCCAGATGACTTTACACAAGTTTTTGGGTAAGAAGGAAACCCCAAGGCCTCAACTTGGGGATCCCAAGATCGGCAAGAATGAGCAAGATTGCTTCGTAGGAGATGAAGGGGCGAGCTGCATTGAGGTCGACGCTGAGGCAGTCAAAACTTGGATATACCCAGTCAATATTCCTCTTCGTGACTACCAGTTTGCTATAACAAAGTCTGCTTTATTTTCAAACACGTTGGTGGCATTGCCAACAGGACTTGGGAAAACCCTGATTGCAGCAGTGGTCATGTACAATTACTTCCGATGGTTTCCTAGAGGGAAAATTGTCTTTACTGCTCCTTCTCGGCCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGTCGGAATACCTCAAGAATGGACAATTGATATGACGGGTCAACTAAGTCCTGCTAAAAGAGCATGCTTTTGGAAAACCAAACGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAAGATATTCATTCCGGTAAATGTTTGGTGAAATACTTGGTATGTTTGGTAATTGATGAAGCCCACAGAGCAATGGGAAATTACTCTTATTGTGAAGTAGTTCGTGAGTTAATGGCTGTGCCAGTGCAGCTGCGAATATTGGCTTTAACTGCAACACCGGGAGCAAAGCGGCAAACGGTCCAGCAAGTCATTGATAATCTGCATATCTCCAATCTTGAATATCGCAATGAAAATGATCCCGATGTTATCTCCTATGTTCACAAAAGGAAGATAGAGTTGATTCAGGTTGCAATGGGTCAAGATGCGGTAGAAATAAACCAGCAGCTTTTGGAAGTAATACGCCCAATTGTAGGTCGCCTCTCGACAATTGGAGTCCTCAAAAATAGAGATTACCGCACCTTGAGCCCTTGTGAATTACTTGAAATACGGGAAAAGTATCGTCAAGCACCTCCACAAGATCTTTCCAGTGTCAACAATGGAGATGTTGAGGGCTATTTTGGAGTTCTTATTAGTCTTTACTACATCCATAAGCTACTTTCAAGTCATGGAATCAGGCCAGCGCACGAGATGCTTGAAAGAAAATTGAAGCAAGGATTTTTTGCAAAATATGTGAGTAAAAACGAAGTTCTTTTGAAAGCAAGGATGTCAATGCAGCAAAACTTATCTCATGGAGCACCAAGTCCCAAGTTATCCAAAATGCTTGAAATACTGCGGGAACATTTCAAAGCCAATGATCCTCAGAGCTCTAGGGTTATTATTTTCTCGAATTATAGGGAAAGTGTGAGGGATATAATGGATGCACTAGCAAATATTGGGGAACCAATCAGAGCTACTCAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGTCAGTCCCAGAAAGTTCAACAGGCAGTGCTGCAGAAATTCCGTTGTGGAGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTTGTAGCTTTTGATGCTAATGTATCGCCACTAAGAATGATTCAGCGCATGGGGAGAACTGGAAGAAAGCACGATGGACAAGTTGTAGTTTTAGCTTGTGAAGGGACTGAACTGAAGGGATACTTGCGGAAACAAGCCAAGAGCAAGGCTATTAGTAAACACATGCGGAATGGGGGCATAAATAGCTTCACTTTTCATCCTAGTCCCAGGATGATTCCCCACGTCTTTAAACCAGAGGTTCAGTTTGTTGAGCTGTCAATTGAGAAATTTGTTTCCCGTGAGAAGAAAGTAAGAGGTGACTCCATTCAGATACATGCATCTATTGGCAAACTCACAGCAGCAGAGAATAATATACTTGCGAAGTATTCAACCACTGGTGAAAATACGTGGAAGCCATCTCTTGTTGCCTTTCCTTACTTCCAGACATATCCTTCTAGAACACATAAAGTGAATCATTCCTGTAGAGCAATAATGCTCATTGATTTGATGCAACGTCTGCAAGGACAAACGTCATTCTTAGGAAACAGTAAAACTTCCATCCCTCAGGATGGCCCGTGTATAGAAGCTAGCAATGCATCCGACCTAAACAAGATTCGCGAAGTTAGATCAGACAACAAATCACACTCTAGGCATACCGTTGGAAGCAATGCAGTCTCTGTAAGTTGCCTGAAGCTGGATCCCTCTCGTTTAGGGATTCAGACTGAAGACTTTGTTGATCTAACTGCACCAGATAATATTGTGGGAGAACAGAGATCGCCTAATACAAGTTGCATAAAGAAGGATGATCTACCGTCATCTACTTTATTTGACTTAGATGAAAATAAAGAGAAAACATGTGAGTTTGAAGAGACAGTTCCTGACACTCCAATTGCTAACACAGTTATGTCAGATGAAGGGCATAGCAATAGTGGAACGCCTGATCATTCTCAGTTCAAGACATCTTTGTTGCTAGACGACGTATTCAATAACGACATCAATGAGTCCCAGTGTAGTCCCCGTTTGACCAGTTTAATTAAAAGTGGTGTTGTTCCAGAGTCTCCCATTGATGAGAGGACTGATTTCTTCCAGGGTTATCAAGAAGCCAGCTTATCATTCGGCACTCGGACATTACCAAACCGGAGCTTTAGTGAAGATTCACCTTTATGTGGTGGAGATGTTGCTGATAGTGTCAAGCCAGCACATAGATTTAAAAGGTTGCGTAAAGCTGAGGATGGTAGGCGTCATCGGAAAGAGAAAAGCAGAAAAGATCATGGCAAAGGTAGAAGGAAATCAATGCACAATGTCAGAGTCTTCATTGACGACGAGGCTGAGGTTTCTTCAGAAGCTGACGTTTCTAATGATGAGGATGGTGAGGATGACAGTTCATCGGATAGTTTCATAGATGACAGGATGAACCCTACAGCAACAACTCAGTCCAGAGCTAGCGGAATAGACATGATGGCAATATACAGGCGTTCTTTGCTCAGTCAAATACCAGTTGAAGGAGGGACCAACGTTTCTGCAACATTTAGTCCTGACTACGTGTCGTCTATGACTATAATTAGTGAAAATGGGGACTCTTCTGGCAGCATACCAAGACATATTCAGACTCGTCAAATTGAGCAAACAAATCAGTCAGCTTCCAAGAGTTTGCAGTCCGTTGAAGGCAACCAAATCACCTCAGAAGCTACACCTTCGAGTAGTTTTCCCTGCTGA 3315 0.4268 MSSANPYEIIDDGDDGEAFDWDAAARKIDVACQVTKPTTLLVGDTSNSRQMTLHKFLGKKETPRPQLGDPKIGKNEQDCFVGDEGASCIEVDAEAVKTWIYPVNIPLRDYQFAITKSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPRGKIVFTAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQLSPAKRACFWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEVVRELMAVPVQLRILALTATPGAKRQTVQQVIDNLHISNLEYRNENDPDVISYVHKRKIELIQVAMGQDAVEINQQLLEVIRPIVGRLSTIGVLKNRDYRTLSPCELLEIREKYRQAPPQDLSSVNNGDVEGYFGVLISLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYVSKNEVLLKARMSMQQNLSHGAPSPKLSKMLEILREHFKANDPQSSRVIIFSNYRESVRDIMDALANIGEPIRATQFIGQSSGKTMKGQSQKVQQAVLQKFRCGAYNVIVATSIGEEGLDIMEVDLVVAFDANVSPLRMIQRMGRTGRKHDGQVVVLACEGTELKGYLRKQAKSKAISKHMRNGGINSFTFHPSPRMIPHVFKPEVQFVELSIEKFVSREKKVRGDSIQIHASIGKLTAAENNILAKYFXTTGENTWKPSLVAFPYFQTYPSRTHKVNHSCRAIMLIDLMQRLQGQTSFLGNSKTSIPQDGPCIEASNASDLNKIREVRSDNKSHSRHTVGSNAVSVSCLKLDPSRLGIQTEDFVDLTAPDNIVGEQRSPNTSCIKKDDLPSSTLFDLDENKEKTCEFEETVPDTPIANTVMSDEGHSNSGTPDHSQFKTSLLLDDVFNNDINESQCSPRLTSLIKSGVVPESPIDERTDFFQGYQEASLSFGTRTLPNRSFSEDSPLCGGDVADSVKPAHRFKRLRKAEDGRRHRKEKSRKDHGKGRRKSMHNVRVFIDDEAEVSSEADVSNDEDGEDDSSSDSFIDDRMNPTATTQSRASGIDMMAIYRRSLLSQIPVEGGTNVSATFSPDYVSSMTIISENGDSSGSIPRHIQTRQIEQTNQSASKSLQSVEGNQITSEATPSSSFPC 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3867g00001 1105 Gene3D - 102 297 IPR027417 -
Pral3867g00001 1105 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 9 1090 - -
Pral3867g00001 1105 MobiDBLite consensus disorder prediction 909 1011 - -
Pral3867g00001 1105 Gene3D - 430 598 IPR027417 -
Pral3867g00001 1105 MobiDBLite consensus disorder prediction 978 997 - -
Pral3867g00001 1105 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 282 IPR014001 -
Pral3867g00001 1105 Pfam Helicase conserved C-terminal domain 445 563 IPR001650 -
Pral3867g00001 1105 SMART ultradead3 103 303 IPR014001 -
Pral3867g00001 1105 CDD DEXDc_FANCM 105 286 IPR044749 GO:0005524
Pral3867g00001 1105 MobiDBLite consensus disorder prediction 1058 1105 - -
Pral3867g00001 1105 FunFam Fanconi anemia, complementation group M 102 297 - -
Pral3867g00001 1105 CDD SF2_C_FANCM_Hef 438 572 - -
Pral3867g00001 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 577 IPR027417 -
Pral3867g00001 1105 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 440 608 IPR001650 -
Pral3867g00001 1105 FunFam ATP-dependent RNA helicase, putative 427 598 - -
Pral3867g00001 1105 CDD FANCM_ID 314 421 IPR039686 GO:0006281|GO:0043138
Pral3867g00001 1105 Gene3D hef helicase domain 311 429 - -
Pral3867g00001 1105 MobiDBLite consensus disorder prediction 831 850 - -
Pral3867g00001 1105 Pfam Type III restriction enzyme, res subunit 119 264 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pral3867g00001 1105 MobiDBLite consensus disorder prediction 941 966 - -
Pral3867g00001 1105 SMART helicmild6 473 564 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3867g00001 Pral-Chr3867 2823 15465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3867g00001 463 562 Eukaryotic Initiation Factors Gene Family AT3G13920 27.000 2.95e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3867g00001 K10896 - qsa:O6P43_030010 1258.05