Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3866g00003 ATGTCCTTTTCTGCTGGTCCTTTCTCATTAGGGAAAATTGTCTTTACTGCTCCTTCTCGGCCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGTCGGAATACCTCAAGAATGGACAATTGATATGACGGGTCAACTAAGTCCTGCTAAAAGAGCATGCTTTTGGAAAACCAAACGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAAGATATTCATTCCGGTAAATGTTTGGTGAAATACTTGGTATGTTTGGTAATTGATGAAGCCCACAGAGCAATGGGAAATTACTCTTATTGTGAAGTAGTTCGTGAGTTAATGGCTGTGCCAGTGCAGCTGCGAATATTGGCTTTAACTGCAACACCGGGAGCAAAGCGGCAAACGGTCCAGCAAGTCATTGATAATCTGCATATCTCCAATCTTGAATATCGCAATGAAAATGATCCCGATGTTATCTCCTATGTTCACAAAAGGAAGATAGAGTTGATTCAGGTTGCAATGGGTCAAGATGCGGTAGAAATAAACCAGCAGCTTTTGGAAGTAATACGCCCAATTGTAGGTCGCCTCTCGACAATTGGAGTCCTCAAAAATAGAGATTACCGCACCTTGAGCCCTTGTGAATTACTTGAAATACGGGAAAAGTATCGTCAAGCACCTCCACAAGATCTTTCCAGTGTCAACAATGGAGATGTTGAGGGCTATTTTGGAGTTCTTATTAGTCTTTACTACATCCATAAGCTACTTTCAAGTCATGGAATCAGGCCAGCGCACGAGATGCTTGAAAGAAAATTGAAGCAAGGATTTTTTGCAAAATATGTGAGTAAAAACGAAGTTCTTTTGAAAGCAAGGATGTCAATGCAGCAAAACTTATCTCATGGAGCACCAAGTCCCAAGTTATCCAAAATGCTTGAAATACTGCGGGAACATTTCAAAGCCAATGATCCTCAGAGCTCTAGGGTTATTATTTTCTCGAATTATAGGGAAAGTGTGAGGGATATAATGGATGCACTAGCAAATATTGGGGAACCAATCAGAGCTACTCAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGTCAGTCCCAGAAAGTTCAACAGGCAGTGCTGCAGAAATTCCGTTGTGGAGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTTGTAGCTTTTGATGCTAATGTATCGCCACTAAGAATGATTCAGCGCATGGGGAGAACTGGAAGAAAGCACGATGGACAAGTTGTAGTTTTAGCTTGTGAAGGGACTGAACTGAAGGGATACTTGCGGAAACAAGCCAAGAGCAAGGCTATTAGTAAACACATGCGGAATGGGGGCATAAATAGCTTCACTTTTCATCCTAGTCCCAGGATGATTCCCCACGTCTTTAAACCAGAGGTTCAGTTTGTTGAGCTGTCAATTGAGAAATTTGTTTCCCGTGAGAAGAAAGTAAGAGGTGACTCCATTCAGATACATGCATCTATTGGCAAACTCACAGCAGCAGAGAATAATATACTTGCGAAGTATTTTCCAACCACTGGTGAAAATACGTGGAAGCCATCTCTTGTTGCCTTTCCTTACTTCCAGACATATCCTTCTAGAACACATAAAGTGAATCATTCCTGTAGAGCAATAATGCTCATTGATTTGATGCAACGTCTGCAAGGACAAACGTCATTCTTAGGAAACAGTAAAACTTCCATCCCTCAGGATGGCCCGTGTATAGAAGCTAGCAATGCATCCGACCTAAACAAGATTCGCGAAGTTAGATCAGACAACAAATCACACTCTAGGCATACCGTTGGAAGCAATGCAGTCTCTGTAAGTTGCCTGAAGCTGGATCCCTCTCGTTTAGGGATTCAGACTGAAGACTTTGTTGATCTAACTGCACCAGATAATATTGTGGGAGAACAGAGATCGCCTAATACAAGTTGCATAAAGAAGGATGATCTACCGTCATCTAGTTTTATTGACTTAGATGAAAATAAAGAGAAAACATGTGAGTTTGAAGAGACAGTTCCTGACACTCCAATTGCTAACACAGTTATGTCAGATGAAGGGCATAGCAATAGTGGAACGCCTGATCATTCTCAGTTCAAGACATCTTTGTTGCTAGACGACGTATTCAATAACGACATCAATGAGTCCCAGTGTAGTCCCCGTTTGACCAGTTTAATTAAAAGTGGTGTTGTTCCAGAGTCTCCCATTGATGAGAGGACTGATTTTCTTCCAGGTCATGATGGGTTATCAAGAAGCCAGCTTATCATTCGGCACTGTAAACCACTTGTTCATCACCAGACGGAACAACAAATTACCTCAAGTTTAGGGACAAATGAAGAGGTCGTTATTGATAATGCCGCAGATGTAAATAACGTACCTATTGATCCTTCTAATAATGAAACTCAAACTCTTTTATTCGAACGGAAGAGTCGTGCAATTAGAAGAGTTCATGTCTTTAGTTCTCCTGTGGTGGAGGAAGCCCAAAATCTTTTAGCGGATATTACCAACCGGAGCTTTAGTGAAGATTCACCTTTATGTGGTGGAAATGTTGCTGATAGTGTCAAGCCAGCACATAGATTTAAAAGGTTGCGTAAAGCTGACGATGGTAGGCGTCATAGGAAAGAGAAAAGCAGAAAAGATCATGGCAAAGGTAGAAGGAAATCAATGCACAATGTCAGAGTCTTCATTGACGACGAGGCTGAGGTTTCTTCAGAAGCTGACGTTTCTAATGATGAGGATGGTGAGGATGACAGTTCATCGGATAGTTTCATAGATGACAGGATGAACCCTACAGCAACAACTCAGTCCAGAGCTAGCGGAATAGACATGATGGCAATATACAGGCGTTCTTTGCTCAGTCAAATACCAGTTGAAGGAGGGACCAACGTTTCTGCAACATTTAGTCCTGACTACGTGTCGTCTATGACTATAATTAGTGAAAATGGGGACTCTTCTGGCAGCATACCAAGACATATTCAGACTCGTCAAATTGAGCAAACAAATCAGTCAGCTTCCAAGAGTTTGCAGTCCGTTGAAGGCAACCAAATCACCTCAGAAGCTACACCTTCGAGTAGTTTTCCTGCTGAAAACACGACACAGATGAGAAGTCGAAAAAGAAAATTGTCATTTCATCGTTTTGGATTTCCAAGTGCAAATCTTGAGCAGCAATTTGCACTTCAATCAAACGAAGAACCTATGGATGCTTGTGCAGCTAAGGATATTCTCTGTGATGATCACATTTTTGATAATATTGACCTTGATGAGTTGGAGGCTCAAGCAGCTTCTCTTCTTAAACAAAACTCAGATTTTTCAGCTCAGAAGCAAGGTGCGCATACAATACCTCAATCTCACTTGCAAAATCCTCACCTTTCCAACCCATCATTCGACCTTGGGATATGA 3438 0.4139 MSFSAGPFSLGKIVFTAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQLSPAKRACFWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEVVRELMAVPVQLRILALTATPGAKRQTVQQVIDNLHISNLEYRNENDPDVISYVHKRKIELIQVAMGQDAVEINQQLLEVIRPIVGRLSTIGVLKNRDYRTLSPCELLEIREKYRQAPPQDLSSVNNGDVEGYFGVLISLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYVSKNEVLLKARMSMQQNLSHGAPSPKLSKMLEILREHFKANDPQSSRVIIFSNYRESVRDIMDALANIGEPIRATQFIGQSSGKTMKGQSQKVQQAVLQKFRCGAYNVIVATSIGEEGLDIMEVDLVVAFDANVSPLRMIQRMGRTGRKHDGQVVVLACEGTELKGYLRKQAKSKAISKHMRNGGINSFTFHPSPRMIPHVFKPEVQFVELSIEKFVSREKKVRGDSIQIHASIGKLTAAENNILAKYFPTTGENTWKPSLVAFPYFQTYPSRTHKVNHSCRAIMLIDLMQRLQGQTSFLGNSKTSIPQDGPCIEASNASDLNKIREVRSDNKSHSRHTVGSNAVSVSCLKLDPSRLGIQTEDFVDLTAPDNIVGEQRSPNTSCIKKDDLPSSSFIDLDENKEKTCEFEETVPDTPIANTVMSDEGHSNSGTPDHSQFKTSLLLDDVFNNDINESQCSPRLTSLIKSGVVPESPIDERTDFLPGHDGLSRSQLIIRHCKPLVHHQTEQQITSSLGTNEEVVIDNAADVNNVPIDPSNNETQTLLFERKSRAIRRVHVFSSPVVEEAQNLLADITNRSFSEDSPLCGGNVADSVKPAHRFKRLRKADDGRRHRKEKSRKDHGKGRRKSMHNVRVFIDDEAEVSSEADVSNDEDGEDDSSSDSFIDDRMNPTATTQSRASGIDMMAIYRRSLLSQIPVEGGTNVSATFSPDYVSSMTIISENGDSSGSIPRHIQTRQIEQTNQSASKSLQSVEGNQITSEATPSSSFPAENTTQMRSRKRKLSFHRFGFPSANLEQQFALQSNEEPMDACAAKDILCDDHIFDNIDLDELEAQAASLLKQNSDFSAQKQGAHTIPQSHLQNPHLSNPSFDLGI 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3866g00003 1145 Gene3D - 5 157 IPR027417 -
Pral3866g00003 1145 MobiDBLite consensus disorder prediction 914 933 - -
Pral3866g00003 1145 Pfam DEAD/DEAH box helicase 12 125 IPR011545 GO:0003676|GO:0005524
Pral3866g00003 1145 Coils Coil 1099 1119 - -
Pral3866g00003 1145 Gene3D hef helicase domain 171 289 - -
Pral3866g00003 1145 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 142 IPR014001 -
Pral3866g00003 1145 MobiDBLite consensus disorder prediction 1010 1051 - -
Pral3866g00003 1145 MobiDBLite consensus disorder prediction 1119 1145 - -
Pral3866g00003 1145 CDD SF2_C_FANCM_Hef 298 432 - -
Pral3866g00003 1145 CDD FANCM_ID 174 281 IPR039686 GO:0006281|GO:0043138
Pral3866g00003 1145 SMART helicmild6 333 424 IPR001650 -
Pral3866g00003 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 437 IPR027417 -
Pral3866g00003 1145 MobiDBLite consensus disorder prediction 1119 1139 - -
Pral3866g00003 1145 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 468 IPR001650 -
Pral3866g00003 1145 Pfam Helicase conserved C-terminal domain 305 423 IPR001650 -
Pral3866g00003 1145 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 10 1122 - -
Pral3866g00003 1145 MobiDBLite consensus disorder prediction 1010 1045 - -
Pral3866g00003 1145 FunFam ATP-dependent RNA helicase, putative 287 458 - -
Pral3866g00003 1145 Gene3D - 290 458 IPR027417 -
Pral3866g00003 1145 MobiDBLite consensus disorder prediction 877 902 - -
Pral3866g00003 1145 MobiDBLite consensus disorder prediction 855 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3866g00003 Pral-Chr3866 19545 29918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3866g00003 323 422 Eukaryotic Initiation Factors Gene Family AT3G13920 27.000 4.74e-06 48.5