Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral3866g00003 | ATGTCCTTTTCTGCTGGTCCTTTCTCATTAGGGAAAATTGTCTTTACTGCTCCTTCTCGGCCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGTCGGAATACCTCAAGAATGGACAATTGATATGACGGGTCAACTAAGTCCTGCTAAAAGAGCATGCTTTTGGAAAACCAAACGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAAGATATTCATTCCGGTAAATGTTTGGTGAAATACTTGGTATGTTTGGTAATTGATGAAGCCCACAGAGCAATGGGAAATTACTCTTATTGTGAAGTAGTTCGTGAGTTAATGGCTGTGCCAGTGCAGCTGCGAATATTGGCTTTAACTGCAACACCGGGAGCAAAGCGGCAAACGGTCCAGCAAGTCATTGATAATCTGCATATCTCCAATCTTGAATATCGCAATGAAAATGATCCCGATGTTATCTCCTATGTTCACAAAAGGAAGATAGAGTTGATTCAGGTTGCAATGGGTCAAGATGCGGTAGAAATAAACCAGCAGCTTTTGGAAGTAATACGCCCAATTGTAGGTCGCCTCTCGACAATTGGAGTCCTCAAAAATAGAGATTACCGCACCTTGAGCCCTTGTGAATTACTTGAAATACGGGAAAAGTATCGTCAAGCACCTCCACAAGATCTTTCCAGTGTCAACAATGGAGATGTTGAGGGCTATTTTGGAGTTCTTATTAGTCTTTACTACATCCATAAGCTACTTTCAAGTCATGGAATCAGGCCAGCGCACGAGATGCTTGAAAGAAAATTGAAGCAAGGATTTTTTGCAAAATATGTGAGTAAAAACGAAGTTCTTTTGAAAGCAAGGATGTCAATGCAGCAAAACTTATCTCATGGAGCACCAAGTCCCAAGTTATCCAAAATGCTTGAAATACTGCGGGAACATTTCAAAGCCAATGATCCTCAGAGCTCTAGGGTTATTATTTTCTCGAATTATAGGGAAAGTGTGAGGGATATAATGGATGCACTAGCAAATATTGGGGAACCAATCAGAGCTACTCAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGTCAGTCCCAGAAAGTTCAACAGGCAGTGCTGCAGAAATTCCGTTGTGGAGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTTGTAGCTTTTGATGCTAATGTATCGCCACTAAGAATGATTCAGCGCATGGGGAGAACTGGAAGAAAGCACGATGGACAAGTTGTAGTTTTAGCTTGTGAAGGGACTGAACTGAAGGGATACTTGCGGAAACAAGCCAAGAGCAAGGCTATTAGTAAACACATGCGGAATGGGGGCATAAATAGCTTCACTTTTCATCCTAGTCCCAGGATGATTCCCCACGTCTTTAAACCAGAGGTTCAGTTTGTTGAGCTGTCAATTGAGAAATTTGTTTCCCGTGAGAAGAAAGTAAGAGGTGACTCCATTCAGATACATGCATCTATTGGCAAACTCACAGCAGCAGAGAATAATATACTTGCGAAGTATTTTCCAACCACTGGTGAAAATACGTGGAAGCCATCTCTTGTTGCCTTTCCTTACTTCCAGACATATCCTTCTAGAACACATAAAGTGAATCATTCCTGTAGAGCAATAATGCTCATTGATTTGATGCAACGTCTGCAAGGACAAACGTCATTCTTAGGAAACAGTAAAACTTCCATCCCTCAGGATGGCCCGTGTATAGAAGCTAGCAATGCATCCGACCTAAACAAGATTCGCGAAGTTAGATCAGACAACAAATCACACTCTAGGCATACCGTTGGAAGCAATGCAGTCTCTGTAAGTTGCCTGAAGCTGGATCCCTCTCGTTTAGGGATTCAGACTGAAGACTTTGTTGATCTAACTGCACCAGATAATATTGTGGGAGAACAGAGATCGCCTAATACAAGTTGCATAAAGAAGGATGATCTACCGTCATCTAGTTTTATTGACTTAGATGAAAATAAAGAGAAAACATGTGAGTTTGAAGAGACAGTTCCTGACACTCCAATTGCTAACACAGTTATGTCAGATGAAGGGCATAGCAATAGTGGAACGCCTGATCATTCTCAGTTCAAGACATCTTTGTTGCTAGACGACGTATTCAATAACGACATCAATGAGTCCCAGTGTAGTCCCCGTTTGACCAGTTTAATTAAAAGTGGTGTTGTTCCAGAGTCTCCCATTGATGAGAGGACTGATTTTCTTCCAGGTCATGATGGGTTATCAAGAAGCCAGCTTATCATTCGGCACTGTAAACCACTTGTTCATCACCAGACGGAACAACAAATTACCTCAAGTTTAGGGACAAATGAAGAGGTCGTTATTGATAATGCCGCAGATGTAAATAACGTACCTATTGATCCTTCTAATAATGAAACTCAAACTCTTTTATTCGAACGGAAGAGTCGTGCAATTAGAAGAGTTCATGTCTTTAGTTCTCCTGTGGTGGAGGAAGCCCAAAATCTTTTAGCGGATATTACCAACCGGAGCTTTAGTGAAGATTCACCTTTATGTGGTGGAAATGTTGCTGATAGTGTCAAGCCAGCACATAGATTTAAAAGGTTGCGTAAAGCTGACGATGGTAGGCGTCATAGGAAAGAGAAAAGCAGAAAAGATCATGGCAAAGGTAGAAGGAAATCAATGCACAATGTCAGAGTCTTCATTGACGACGAGGCTGAGGTTTCTTCAGAAGCTGACGTTTCTAATGATGAGGATGGTGAGGATGACAGTTCATCGGATAGTTTCATAGATGACAGGATGAACCCTACAGCAACAACTCAGTCCAGAGCTAGCGGAATAGACATGATGGCAATATACAGGCGTTCTTTGCTCAGTCAAATACCAGTTGAAGGAGGGACCAACGTTTCTGCAACATTTAGTCCTGACTACGTGTCGTCTATGACTATAATTAGTGAAAATGGGGACTCTTCTGGCAGCATACCAAGACATATTCAGACTCGTCAAATTGAGCAAACAAATCAGTCAGCTTCCAAGAGTTTGCAGTCCGTTGAAGGCAACCAAATCACCTCAGAAGCTACACCTTCGAGTAGTTTTCCTGCTGAAAACACGACACAGATGAGAAGTCGAAAAAGAAAATTGTCATTTCATCGTTTTGGATTTCCAAGTGCAAATCTTGAGCAGCAATTTGCACTTCAATCAAACGAAGAACCTATGGATGCTTGTGCAGCTAAGGATATTCTCTGTGATGATCACATTTTTGATAATATTGACCTTGATGAGTTGGAGGCTCAAGCAGCTTCTCTTCTTAAACAAAACTCAGATTTTTCAGCTCAGAAGCAAGGTGCGCATACAATACCTCAATCTCACTTGCAAAATCCTCACCTTTCCAACCCATCATTCGACCTTGGGATATGA | 3438 | 0.4139 | MSFSAGPFSLGKIVFTAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQLSPAKRACFWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEVVRELMAVPVQLRILALTATPGAKRQTVQQVIDNLHISNLEYRNENDPDVISYVHKRKIELIQVAMGQDAVEINQQLLEVIRPIVGRLSTIGVLKNRDYRTLSPCELLEIREKYRQAPPQDLSSVNNGDVEGYFGVLISLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYVSKNEVLLKARMSMQQNLSHGAPSPKLSKMLEILREHFKANDPQSSRVIIFSNYRESVRDIMDALANIGEPIRATQFIGQSSGKTMKGQSQKVQQAVLQKFRCGAYNVIVATSIGEEGLDIMEVDLVVAFDANVSPLRMIQRMGRTGRKHDGQVVVLACEGTELKGYLRKQAKSKAISKHMRNGGINSFTFHPSPRMIPHVFKPEVQFVELSIEKFVSREKKVRGDSIQIHASIGKLTAAENNILAKYFPTTGENTWKPSLVAFPYFQTYPSRTHKVNHSCRAIMLIDLMQRLQGQTSFLGNSKTSIPQDGPCIEASNASDLNKIREVRSDNKSHSRHTVGSNAVSVSCLKLDPSRLGIQTEDFVDLTAPDNIVGEQRSPNTSCIKKDDLPSSSFIDLDENKEKTCEFEETVPDTPIANTVMSDEGHSNSGTPDHSQFKTSLLLDDVFNNDINESQCSPRLTSLIKSGVVPESPIDERTDFLPGHDGLSRSQLIIRHCKPLVHHQTEQQITSSLGTNEEVVIDNAADVNNVPIDPSNNETQTLLFERKSRAIRRVHVFSSPVVEEAQNLLADITNRSFSEDSPLCGGNVADSVKPAHRFKRLRKADDGRRHRKEKSRKDHGKGRRKSMHNVRVFIDDEAEVSSEADVSNDEDGEDDSSSDSFIDDRMNPTATTQSRASGIDMMAIYRRSLLSQIPVEGGTNVSATFSPDYVSSMTIISENGDSSGSIPRHIQTRQIEQTNQSASKSLQSVEGNQITSEATPSSSFPAENTTQMRSRKRKLSFHRFGFPSANLEQQFALQSNEEPMDACAAKDILCDDHIFDNIDLDELEAQAASLLKQNSDFSAQKQGAHTIPQSHLQNPHLSNPSFDLGI | 1145 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral3866g00003 | 1145 | Gene3D | - | 5 | 157 | IPR027417 | - | |
Pral3866g00003 | 1145 | MobiDBLite | consensus disorder prediction | 914 | 933 | - | - | |
Pral3866g00003 | 1145 | Pfam | DEAD/DEAH box helicase | 12 | 125 | IPR011545 | GO:0003676|GO:0005524 | |
Pral3866g00003 | 1145 | Coils | Coil | 1099 | 1119 | - | - | |
Pral3866g00003 | 1145 | Gene3D | hef helicase domain | 171 | 289 | - | - | |
Pral3866g00003 | 1145 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 142 | IPR014001 | - | |
Pral3866g00003 | 1145 | MobiDBLite | consensus disorder prediction | 1010 | 1051 | - | - | |
Pral3866g00003 | 1145 | MobiDBLite | consensus disorder prediction | 1119 | 1145 | - | - | |
Pral3866g00003 | 1145 | CDD | SF2_C_FANCM_Hef | 298 | 432 | - | - | |
Pral3866g00003 | 1145 | CDD | FANCM_ID | 174 | 281 | IPR039686 | GO:0006281|GO:0043138 | |
Pral3866g00003 | 1145 | SMART | helicmild6 | 333 | 424 | IPR001650 | - | |
Pral3866g00003 | 1145 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 12 | 437 | IPR027417 | - | |
Pral3866g00003 | 1145 | MobiDBLite | consensus disorder prediction | 1119 | 1139 | - | - | |
Pral3866g00003 | 1145 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 300 | 468 | IPR001650 | - | |
Pral3866g00003 | 1145 | Pfam | Helicase conserved C-terminal domain | 305 | 423 | IPR001650 | - | |
Pral3866g00003 | 1145 | PANTHER | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER | 10 | 1122 | - | - | |
Pral3866g00003 | 1145 | MobiDBLite | consensus disorder prediction | 1010 | 1045 | - | - | |
Pral3866g00003 | 1145 | FunFam | ATP-dependent RNA helicase, putative | 287 | 458 | - | - | |
Pral3866g00003 | 1145 | Gene3D | - | 290 | 458 | IPR027417 | - | |
Pral3866g00003 | 1145 | MobiDBLite | consensus disorder prediction | 877 | 902 | - | - | |
Pral3866g00003 | 1145 | MobiDBLite | consensus disorder prediction | 855 | 950 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral3866g00003 | Pral-Chr3866 | 19545 | 29918 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral3866g00003 | 323 | 422 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 27.000 | 4.74e-06 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral3866g00003 | K10896 | - | qsa:O6P43_030010 | 1186.79 |