LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3860g00005	TTTGGTTCTGTCCCTGGGGTTGAAATAGGTGATGAGTTCGACTACAGAGTGGAGCTTAATCTCGTCAGTCTTCATCGCAATTTACAGGCTGGCATAGACTATGGAATGCACAATGGTGTGCTCCTTGCTGCTAGTATTGTTGCATCTGGGGGGTACGACGATGAGTTGGATAATTCAGGTGTCTTGATTTATTCGGGGCATGGGGGGAATGTGATGCACAGCAAGAAAAAGCCTGAAGACCAGAAGCTCGAGCGGGGGAATCTTGCTTTGAAGAACAGTAGCAAGGAAAAAAATCCTGTCAGGGTGACCCGTGGTGCTTTCTTTGGAGATGAAAGTCGTAAGAGATATGTGTATGATGGGTTGTATGAAGTTGAGACATATTGGCAAGAAAGGGGGCCACATGGCAAGATGGTTTTCAAGTTTCAGCTGCAAAGAATCCCAAACCAACCAGAGCTTCCTTGGATTGAACTGAAGAATTCCAAAAAGTTCACATTAAGGAAGGGTTTATGTGTCATTGACATCTCACATGGTAAGGAGGCACTGCCAATTCGTGCTGTAAATACCATAGATGATGAAAGACCACCACCATTTGAATATATCACTAGGATGATCTATCCTGATTGGTTGCATCCGACGCCTGCTAAGGGATGTAACTGTACGGACAGATGCTCTGACCCGACAAGATGTTCTTGTGCTGTTAAAAATGGAGGAATCCCATTCAATCACACAGGGTGTATTGTAGAAGTAAAGCCTCTGGTGTATGAGTGTGGCCCTTCTTGCAAATGCCCTCCAGATTGCTATAACAGAGTCAGCCAACGTGGAATAAAATTCCCGCTTGAAGTTTATAAAACTGACAAAAGGGGATGGGGTGTGAGATCTCTACGCTCCATTCCTTCTGGAAGTTTTGTATGCGAATACATAGGAGAGTTGCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTCATGATGAGTATCTCTTTGATATAGGTAATAATTTGATCAGTAATGGTATACTTTCTGATGGAGTCTTCATGCCTGAAGTCTCTAAGGATGGTGGTGGTTTTACCATTGATGCAGCTAGGTATGGTAATTTGGGCAGATTTTTCAACCACAGTTGCGCCCCTAACATGTATGCACAAAATGTTCTGTATGATCATGGTGACCGCAAGATTCCTCACATAATGCTGTTTGCTGCTGAGAACATTTCTCCGTTAAAAGAGCTGACTTATGATTACAATTACTCTAAAGATCAAATCTTCGATTCTGATGGCAATATAAAGAAGAAGGATTGCTATTGTGGCTCTTTGGGGTGTACTGGAAGGATGTATTGA	1332	0.4294	FGSVPGVEIGDEFDYRVELNLVSLHRNLQAGIDYGMHNGVLLAASIVASGGYDDELDNSGVLIYSGHGGNVMHSKKKPEDQKLERGNLALKNSSKEKNPVRVTRGAFFGDESRKRYVYDGLYEVETYWQERGPHGKMVFKFQLQRIPNQPELPWIELKNSKKFTLRKGLCVIDISHGKEALPIRAVNTIDDERPPPFEYITRMIYPDWLHPTPAKGCNCTDRCSDPTRCSCAVKNGGIPFNHTGCIVEVKPLVYECGPSCKCPPDCYNRVSQRGIKFPLEVYKTDKRGWGVRSLRSIPSGSFVCEYIGELLEDKEAEQRTGHDEYLFDIGNNLISNGILSDGVFMPEVSKDGGGFTIDAARYGNLGRFFNHSCAPNMYAQNVLYDHGDRKIPHIMLFAAENISPLKELTYDYNYSKDQIFDSDGNIKKKDCYCGSLGCTGRMY	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3860g00005	443	Pfam	SET domain	288	413	IPR001214	GO:0005515
	Pral3860g00005	443	SMART	preset_2	171	261	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pral3860g00005	443	ProSiteProfiles	SET domain profile.	277	413	IPR001214	GO:0005515
	Pral3860g00005	443	SUPERFAMILY	SET domain	160	420	IPR046341	-
	Pral3860g00005	443	SUPERFAMILY	PUA domain-like	1	158	IPR015947	-
	Pral3860g00005	443	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	1	435	-	-
	Pral3860g00005	443	SMART	set_7	277	419	IPR001214	GO:0005515
	Pral3860g00005	443	Pfam	Pre-SET motif	174	269	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pral3860g00005	443	SMART	G9a_1	1	149	IPR003105	-
	Pral3860g00005	443	ProSiteProfiles	Pre-SET domain profile.	215	274	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pral3860g00005	443	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	2	443	IPR025794	GO:0016571
	Pral3860g00005	443	Pfam	SAD/SRA domain	1	149	IPR003105	-
	Pral3860g00005	443	ProSiteProfiles	Post-SET domain profile.	427	443	IPR003616	-
	Pral3860g00005	443	Gene3D	-	1	166	IPR036987	-
	Pral3860g00005	443	ProSiteProfiles	YDG domain profile.	2	145	IPR003105	-
	Pral3860g00005	443	Gene3D	SET domain	167	443	IPR046341	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3860g00005	Pral-Chr3860	43193	44524	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3860g00005	1	443	EF-hand Containing Proteins	AT5G13960	39.749	8.54e-113	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pral3860g00005		SAD_SRA	1.1e-48	CL0178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3860g00005	K11420		-	jre:108991569	662.144