Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3860g00002 ATGGAAGAAGAAAGCAGCACCAGAACACAAGGATGTATCATGAATTCTCCTGCACCGGCTCCGGCATCGTCTTACCGGGGGGTTCGGAAGCGAAAATGGGGCAAATGGGTGTCGGAAATCCGTGAGCCTGGTAAGAAGACTCGGGTATGGTTGGGAAGCTACGAGGAGCCTGAAATGGCGGCGGCTGCTTATGATGTTGCGGCCTCACACTTCCGAGGGCGGTCGGCTCGGCTTAACTTTCCTGAGTTCGGCGGTGTGTTTCCGCGGCCAGCGAGCTCACGAGCAGAGGACGTCCGGTTTGCAGCTCAACAAGCAGCATTGATGATGAGGAGACCGTTGGGATGTCAATCATCAAGAAGGGAGGCCGAGGGCGGCGGCAGCGGCGGCCTAGCTCCGGCGACCACGGTGGGGCTGTCGGAAAGTCAGATTCAGGCAATCAATGAGTGGCCATTGGATTCACCAAAGATGTGGATGCAAATGGCTGAAGCTCTCATGTCTGCTGGGTTTGATGAGTCTATGGCATTATATAATAATTACGATGAGGATGGCTTATTGGAATTAACAAGCTGGGAAGAAATCGAGGATGATTCTATATGGGATTTCTAA 606 0.5314 MEEESSTRTQGCIMNSPAPAPASSYRGVRKRKWGKWVSEIREPGKKTRVWLGSYEEPEMAAAAYDVAASHFRGRSARLNFPEFGGVFPRPASSRAEDVRFAAQQAALMMRRPLGCQSSRREAEGGGSGGLAPATTVGLSESQIQAINEWPLDSPKMWMQMAEALMSAGFDESMALYNNYDEDGLLELTSWEEIEDDSIWDF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3860g00002 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 139 - -
Pral3860g00002 201 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Pral3860g00002 201 MobiDBLite consensus disorder prediction 1 29 - -
Pral3860g00002 201 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Pral3860g00002 201 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Pral3860g00002 201 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Pral3860g00002 201 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Pral3860g00002 201 SMART rav1_2 24 86 IPR001471 GO:0003700|GO:0006355
Pral3860g00002 201 MobiDBLite consensus disorder prediction 113 134 - -
Pral3860g00002 201 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Pral3860g00002 201 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
Pral3860g00002 201 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3860g00002 Pral-Chr3860 16064 16669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3860g00002 23 200 AP2-EREBP Transcription Factor Family AT1G71450 50.000 1.55e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3860g00002 AP2 7.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3860g00002 - - gmx:100788567 216.083