Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3859g00014 ATGGAAGAAGAAGAAGCTAAATCCAACGGACAAGGATGTCGGAAACTGTCTTACCGGGGAGCTCGAAAGCGAAAATGGGGGAAATGGGTGTCGGAAATCCGTGAGCCCGGAAAGAAAACTCGGATATGGTTAGGAAGCTACGAAGAACCCGAAATGGCGGCGGTGGCGTATGATGTTGCCGCATCACACTTCCGAGGACCGTCGGCACGACTTAACTTCCCGGAGTTCTTTGGGGCTCTTCCACGGCCCGCGAGCTCCCAAGCAGACGATGTCCGGCTCGCAGCTCAACAAGCAGCATTAATGTTCAGAAGACCATTAGCATCATATCAATCACCAAGCGATGATCAGACCCGAGTCGGCGGCGGCATGGTTCCAGCCACTGTAGGGCCGTCGCTGAGCCAGATTCAGGCCATAAATGAGTTGCCGTTGGATTCACCAAAGATGTGGATACAAATGGCAGAAGCGTTCATGTTAGGGTTTGATGAGTCGATAGCATTATATAACGATGACGACGATGGATTGGAACTGAGAAGATGGGAAGAAATACTGAATGATCCTATGTGGGATTTCTAA 573 0.5061 MEEEEAKSNGQGCRKLSYRGARKRKWGKWVSEIREPGKKTRIWLGSYEEPEMAAVAYDVAASHFRGPSARLNFPEFFGALPRPASSQADDVRLAAQQAALMFRRPLASYQSPSDDQTRVGGGMVPATVGPSLSQIQAINELPLDSPKMWIQMAEAFMLGFDESIALYNDDDDGLELRRWEEILNDPMWDF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3859g00014 190 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Pral3859g00014 190 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Pral3859g00014 190 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Pral3859g00014 190 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Pral3859g00014 190 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Pral3859g00014 190 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Pral3859g00014 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 111 - -
Pral3859g00014 190 CDD AP2 18 75 IPR001471 GO:0003700|GO:0006355
Pral3859g00014 190 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Pral3859g00014 190 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3859g00014 Pral-Chr3859 132060 132632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3859g00014 4 189 AP2-EREBP Transcription Factor Family AT1G71450 46.237 6.06e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral3859g00014 AP2 4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3859g00014 - - gmx:100788567 216.853