Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3859g00013 ATGGAAGAAGAAACGAAATCCAACGGACAAGGATGTCGGAAACTGTCTTACCGGGGAGCTCGAAAGCGAAAATGGGGGAAATGGGTGTCGGAAATCCGTGAGCCCGGCAAGAAAAATCGGATATGGTTAGGAAGCTACGAAGAACCCGAAATGGCGGCGGCGGCGTATGATGTTGCCGCATCACACTTCCGAGGACCGTCGGCACGGCTTAACTTCCCAGAGTTCTTTGGGGCTCTTCCACGGCCGGTGAGCTCCCAGGCAGACGATGTCCGGCTCGCAGCTCAACAAGCAGCATTAATGTTCAGAAGACCATTAGCATCATATCAATCACCAAGCGATGATCAGACCCGAGTCGGCGGCGGCATGGTTCCAGCCACTGTAGGGCCGTCGCTGAGCCAGATTCAGGCCATAAATGAGTTGCCGTTGGATTCACCAAAGATGTGGATGCAAATGGCAGAAGCGTTCATGTTAGGGTTTGATGAGTCGATAGCATTATATAACGATGACGACGATGGATTGGAACTGAGAAGATGGGAAGAAATACTGAATGATCCTATGTGGGATTTCTAA 570 0.5105 MEEETKSNGQGCRKLSYRGARKRKWGKWVSEIREPGKKNRIWLGSYEEPEMAAAAYDVAASHFRGPSARLNFPEFFGALPRPVSSQADDVRLAAQQAALMFRRPLASYQSPSDDQTRVGGGMVPATVGPSLSQIQAINELPLDSPKMWMQMAEAFMLGFDESIALYNDDDDGLELRRWEEILNDPMWDF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3859g00013 189 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Pral3859g00013 189 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Pral3859g00013 189 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Pral3859g00013 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 112 - -
Pral3859g00013 189 CDD AP2 17 74 IPR001471 GO:0003700|GO:0006355
Pral3859g00013 189 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Pral3859g00013 189 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Pral3859g00013 189 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677
Pral3859g00013 189 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Pral3859g00013 189 FunFam Ethylene-responsive transcription factor 2 15 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3859g00013 Pral-Chr3859 120954 121523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3859g00013 3 188 AP2-EREBP Transcription Factor Family AT1G71450 45.699 9.24e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3859g00013 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3859g00013 - - gmx:100788567 219.164