Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3859g00012 ATGGATATGTCTTCTGATATCTCGCATGGCGCTTCGTCTTCTCCATACAGAGGTGTTCGCAAGAGAAAATGGGGCAAATGGGTGTCTGAAATCAGAGAGCCCGGCAAGAAGACCAGAATTTGGTTGGGCAGCTTCAAGACCCCGGAGATGGCCGCTGCGGCTTACGACGTCGCCGCGTTGCACTTCCGGGGACGTGATGCGAGGCTCAACTTCCCTGAGCTCGCCGGCAGCCTGCCCCGTCCGGCTAGTAGTGACGCCGATGACATTCGCATGGCTGCACATGAGGCCGCGTTGAGGCTGATGACGGCGGGGCCCACTTCAGCCCTGGAGGAGTCGTCCGGCTCCGAGGTGGCTCCGGTGATGGTCCGTCTTTCGCCGATGCAGATTCAGGCGATCAACGAGATGCCGTTGGACTCGCCGAGGATGTGGATGCAAATGGCGGACTCGATGATGTTGGATGAAACGATGTCGTTTGTGTATGAGGATGGAAAGGATATGCACAGTGATTCTCTGTGGGATCCGTAG 525 0.5752 MDMSSDISHGASSSPYRGVRKRKWGKWVSEIREPGKKTRIWLGSFKTPEMAAAAYDVAALHFRGRDARLNFPELAGSLPRPASSDADDIRMAAHEAALRLMTAGPTSALEESSGSEVAPVMVRLSPMQIQAINEMPLDSPRMWMQMADSMMLDETMSFVYEDGKDMHSDSLWDP 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3859g00012 174 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Pral3859g00012 174 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Pral3859g00012 174 Pfam AP2 domain 16 64 IPR001471 GO:0003700|GO:0006355
Pral3859g00012 174 PRINTS Ethylene responsive element binding protein signature 54 74 IPR001471 GO:0003700|GO:0006355
Pral3859g00012 174 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Pral3859g00012 174 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Pral3859g00012 174 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Pral3859g00012 174 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Pral3859g00012 174 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Pral3859g00012 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3859g00012 Pral-Chr3859 95828 96709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3859g00012 14 174 AP2-EREBP Transcription Factor Family AT1G71450 64.024 9.44e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3859g00012 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3859g00012 - - tcc:18592880 240.35