Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3859g00006 ATGATATTAAGGAAGCAGCGCCACAAGCAGGGACAGCGCCGTCAGTACAAGGGAGTCCGGCGAAGGAAGTGGGGCAAGTGGGTGTCGGAGATTCGAGTGCCGGGGTCACAACAGCGGTTGTGGTTGGGCACGTATACTTCGCCGGAGGCCGCAGCGGTGGCTCACGACGTGGCTTTCTACTGCCTGAGGAGACCGGCCTCGTTGGAGAAGCTTAACCTCCCGGAGATGTTGCCTTCTTGTTATGTCTGGCAGCAACCAGAAATGTCGCCGAGGTCGGTGCAGGCGGCAGCTTCAAATGCCGGCATGGCAGTTGATGCTCAGAGGATTGTTGAAGCCGAAGAGAAGAATGAGAAAAATGATGAGCACAGAGAAAACAGAGACATGAATGATGGGTTTTGGTGGGACTGGAATGGTGACGGCGGCGGCGGTGCTGACGGTTATTTATGGCAAGGAATCGCCGGCAGTTATTCTCAAGGAGAAGCATCGAGCATTACCGTTGATGATTATCTTCTCGATCTTCAACAATCTTAG 531 0.5386 MILRKQRHKQGQRRQYKGVRRRKWGKWVSEIRVPGSQQRLWLGTYTSPEAAAVAHDVAFYCLRRPASLEKLNLPEMLPSCYVWQQPEMSPRSVQAAASNAGMAVDAQRIVEAEEKNEKNDEHRENRDMNDGFWWDWNGDGGGGADGYLWQGIAGSYSQGEASSITVDDYLLDLQQS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3859g00006 176 Gene3D AP2/ERF domain 14 75 IPR036955 GO:0003700|GO:0006355
Pral3859g00006 176 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Pral3859g00006 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 120 - -
Pral3859g00006 176 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Pral3859g00006 176 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Pral3859g00006 176 ProSiteProfiles AP2/ERF domain profile. 15 74 IPR001471 GO:0003700|GO:0006355
Pral3859g00006 176 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Pral3859g00006 176 SUPERFAMILY DNA-binding domain 15 66 IPR016177 GO:0003677
Pral3859g00006 176 SMART rav1_2 15 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3859g00006 Pral-Chr3859 53386 54714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3859g00006 15 116 AP2-EREBP Transcription Factor Family AT1G22810 61.765 4.04e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3859g00006 AP2 2.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3859g00006 - - pcin:129313911 204.527