Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3859g00005 ATGAGTTGCAGCTCCGGCGACAACAATGGAAGCAGCGTCACAGGGAGGGACAGCGCGGTCAAGCACAAGGGAGTCCGGCGAAGGAAGTGGGGCAAGTGGGTGTCGGAGATTCGAGTTCCGGGGTCACAAGAGCGGCTGTGGTTGGGCACGTATACTTCTCCGGAGGCCGCAGCGGTGGCTCACGACGTGGCTTTCTACTGCCTGAGGAGACCGGCGTCGTTGGAGAAGCTTAACCTACCGGAGATGTTGCCTTCTTGTTATGTCCAGCAGCAACGAGAAATGTCGCCGAGGTCGGTGCAGGCGGCGGCGTCAAATGCCGGCATGGCCGTTGATGCGCAGAGGATTGTGGAAGCAGAAGGATGGAACGAGAAAACTGATGAGCACAGAGAAAACAGAGACATGAATTATGGGTTTTGGTGGGACTGGAATGGTGACGGGGGCGGCGGCGGTGGCGGTGCTGACGGCCATTTATGGCAAGGAATCGCCGGCGGTTATTCTCAAGGAGAAACATCTAGCATTTCCGTTGATGATTATCTTCTTGATCTTCAACATTCTTAG 558 0.5591 MSCSSGDNNGSSVTGRDSAVKHKGVRRRKWGKWVSEIRVPGSQERLWLGTYTSPEAAAVAHDVAFYCLRRPASLEKLNLPEMLPSCYVQQQREMSPRSVQAAASNAGMAVDAQRIVEAEGWNEKTDEHRENRDMNYGFWWDWNGDGGGGGGGADGHLWQGIAGGYSQGETSSISVDDYLLDLQHS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3859g00005 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 122 - -
Pral3859g00005 185 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Pral3859g00005 185 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Pral3859g00005 185 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Pral3859g00005 185 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Pral3859g00005 185 SMART rav1_2 21 86 IPR001471 GO:0003700|GO:0006355
Pral3859g00005 185 MobiDBLite consensus disorder prediction 1 16 - -
Pral3859g00005 185 MobiDBLite consensus disorder prediction 1 23 - -
Pral3859g00005 185 SUPERFAMILY DNA-binding domain 21 72 IPR016177 GO:0003677
Pral3859g00005 185 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Pral3859g00005 185 ProSiteProfiles AP2/ERF domain profile. 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3859g00005 Pral-Chr3859 47268 47825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3859g00005 17 112 AP2-EREBP Transcription Factor Family AT1G22810 63.542 2.20e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3859g00005 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3859g00005 - - pcin:129297410 204.527