Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3859g00003 ATGAGTTGCAGCTCCGGCGACCACAATGGAAGCAGCTTCACAAGCAGGGACAGTGCCATCAAGTACAAGGGAGTCCGGCGAAGGAAGTGGGGCAAGTGGGTGTCGGAGATTCGAGTTCCGGGGTCACAAGAGCGGCTGTGGTTGGGCACGTATACTTCGCCGGAGGCGGCAGCGGTGGCTCACGATGTGGCTTTCTACTGCCTGAGGAGACCGGCCTCGTTGGAGAAGCTTAACCTGCCGGAGATGTTGCCTTCTTGTTATGTCGGGCAGCAACGAGAAATGTCGCCGAGGTCGGTGCAGGGGGCGGCGTCAAATGCCGGCATGGCAGTTGATGCCCAGAGGATTGTTGAAGCCCAAGAGAAGAATGAGAAAACTGATGAGCACAGAGAAAACAGAGACATGAATGATGGGTTTTGGTGGGACTGGAATGGTGGCGGCGGCGGCGGTGCTGACGGCCATTTATGGCAAGGAAGCGCCGGTGGTTATTCTCAAGGAGAAGGATCGAGCATTTCCGTTGATGATTATCTTCTCGATCTTCAACATCCTTAG 549 0.5556 MSCSSGDHNGSSFTSRDSAIKYKGVRRRKWGKWVSEIRVPGSQERLWLGTYTSPEAAAVAHDVAFYCLRRPASLEKLNLPEMLPSCYVGQQREMSPRSVQGAASNAGMAVDAQRIVEAQEKNEKTDEHRENRDMNDGFWWDWNGGGGGGADGHLWQGSAGGYSQGEGSSISVDDYLLDLQHP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3859g00003 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 124 - -
Pral3859g00003 182 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Pral3859g00003 182 SMART rav1_2 21 86 IPR001471 GO:0003700|GO:0006355
Pral3859g00003 182 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Pral3859g00003 182 ProSiteProfiles AP2/ERF domain profile. 21 80 IPR001471 GO:0003700|GO:0006355
Pral3859g00003 182 Gene3D AP2/ERF domain 20 81 IPR036955 GO:0003700|GO:0006355
Pral3859g00003 182 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Pral3859g00003 182 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Pral3859g00003 182 SUPERFAMILY DNA-binding domain 21 72 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3859g00003 Pral-Chr3859 23102 23650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3859g00003 17 112 AP2-EREBP Transcription Factor Family AT1G22810 64.583 7.31e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3859g00003 AP2 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3859g00003 - - pcin:129297410 202.216