Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral3852g00022 | ATGCCTGCCATGAAGAAGAATTCTGAGCAGACTCGGTTAGGCTTTGTGTTCAACAAGTTGGTGAATGAGATAGGAGATCCTGTTGATTTTGAACTTCCAGATTGGTTTAACAAGTGGAAGGCAGTATCATACGTCTCTATAAAGCGCAATATATATGTTACAAAGAAGGTTAAGAGAAGGCTTGATGATGATGGCATATTCTGTTCTTGTACTCCTTCCCCTGGGTCTTCTAGTGTGTGTGGTAAATATTGCCACTGTGGGATGCTTATGTCTAGCTGCTCTTCAGGCTGTAAATGTGGCAGTTCCTGTCTCAACAAACCATTTCAGCATCGACCTACCAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCGAGGGGACTTTGTCATTGAATATGTTGGTGAAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACATCGGGGGGAGACGAACTTCTACTTATGTGAAATTAACAGAGATATGGTGATTGATGCAACATATAAGGGGAACAAATCAAGATATATAAATCATAGTTGCTGTCCCAATACGGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGTGACATAAGGAAGGGCGAGCATCTTACTTACGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGAGTGCAGGCGTAAGTTGGGGGTCCGACCTACCAAACCTAAAACATCATCAGATGCTGCACTAAAATTAGTCGCATATCAGGTTTATCAGAATGGAGGTTTGCATACTGTTGTACCAAAGTACTCGCACAATTGCATTGGAGAAGTTATTAGGATAAATCACCCCACAAAAGAGAGGTGGTGTTTTGGGATCATAAAGCGGTTCGATAAATATTCCAAGAAACACACTATTTTGTTTGAAGATGGTGGTGTTGACTTTATGGACTTGTCAGAAGTAGATTGGGAACTTGTGAGATTGTGA | 1038 | 0.4056 | MPAMKKNSEQTRLGFVFNKLVNEIGDPVDFELPDWFNKWKAVSYVSIKRNIYVTKKVKRRLDDDGIFCSCTPSPGSSSVCGKYCHCGMLMSSCSSGCKCGSSCLNKPFQHRPTKKMKLVQTEKCGSGIVADEDIKRGDFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAAECRRKLGVRPTKPKTSSDAALKLVAYQVYQNGGLHTVVPKYSHNCIGEVIRINHPTKERWCFGIIKRFDKYSKKHTILFEDGGVDFMDLSEVDWELVRL | 345 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral3852g00022 | 345 | ProSiteProfiles | SET domain profile. | 114 | 231 | IPR001214 | GO:0005515 | |
Pral3852g00022 | 345 | SMART | shorttest3 | 63 | 113 | IPR006560 | GO:0005634|GO:0042054 | |
Pral3852g00022 | 345 | Pfam | SET domain | 125 | 230 | IPR001214 | GO:0005515 | |
Pral3852g00022 | 345 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 37 | 291 | IPR025787 | - | |
Pral3852g00022 | 345 | FunFam | Histone-lysine N-methyltransferase | 30 | 269 | - | - | |
Pral3852g00022 | 345 | ProSiteProfiles | Post-SET domain profile. | 237 | 253 | IPR003616 | - | |
Pral3852g00022 | 345 | SMART | PostSET_3 | 237 | 253 | IPR003616 | - | |
Pral3852g00022 | 345 | SUPERFAMILY | SET domain | 39 | 249 | IPR046341 | - | |
Pral3852g00022 | 345 | SMART | set_7 | 114 | 237 | IPR001214 | GO:0005515 | |
Pral3852g00022 | 345 | ProSiteProfiles | AWS domain profile. | 63 | 112 | IPR006560 | GO:0005634|GO:0042054 | |
Pral3852g00022 | 345 | Gene3D | SET domain | 35 | 269 | IPR046341 | - | |
Pral3852g00022 | 345 | PANTHER | SET DOMAIN PROTEINS | 30 | 266 | - | - | |
Pral3852g00022 | 345 | CDD | SET_ASHR3-like | 115 | 253 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral3852g00022 | Pral-Chr3852 | 145541 | 152948 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral3852g00022 | 87 | 249 | C2H2 Transcription Factor Family | AT2G23740 | 34.973 | 1.38e-23 | 100 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Pral3852g00022 | SET | 5.8e-20 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral3852g00022 | - | - | gmx:100808183 | 595.89 |