Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3852g00022 ATGCCTGCCATGAAGAAGAATTCTGAGCAGACTCGGTTAGGCTTTGTGTTCAACAAGTTGGTGAATGAGATAGGAGATCCTGTTGATTTTGAACTTCCAGATTGGTTTAACAAGTGGAAGGCAGTATCATACGTCTCTATAAAGCGCAATATATATGTTACAAAGAAGGTTAAGAGAAGGCTTGATGATGATGGCATATTCTGTTCTTGTACTCCTTCCCCTGGGTCTTCTAGTGTGTGTGGTAAATATTGCCACTGTGGGATGCTTATGTCTAGCTGCTCTTCAGGCTGTAAATGTGGCAGTTCCTGTCTCAACAAACCATTTCAGCATCGACCTACCAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCGAGGGGACTTTGTCATTGAATATGTTGGTGAAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACATCGGGGGGAGACGAACTTCTACTTATGTGAAATTAACAGAGATATGGTGATTGATGCAACATATAAGGGGAACAAATCAAGATATATAAATCATAGTTGCTGTCCCAATACGGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGTGACATAAGGAAGGGCGAGCATCTTACTTACGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGAGTGCAGGCGTAAGTTGGGGGTCCGACCTACCAAACCTAAAACATCATCAGATGCTGCACTAAAATTAGTCGCATATCAGGTTTATCAGAATGGAGGTTTGCATACTGTTGTACCAAAGTACTCGCACAATTGCATTGGAGAAGTTATTAGGATAAATCACCCCACAAAAGAGAGGTGGTGTTTTGGGATCATAAAGCGGTTCGATAAATATTCCAAGAAACACACTATTTTGTTTGAAGATGGTGGTGTTGACTTTATGGACTTGTCAGAAGTAGATTGGGAACTTGTGAGATTGTGA 1038 0.4056 MPAMKKNSEQTRLGFVFNKLVNEIGDPVDFELPDWFNKWKAVSYVSIKRNIYVTKKVKRRLDDDGIFCSCTPSPGSSSVCGKYCHCGMLMSSCSSGCKCGSSCLNKPFQHRPTKKMKLVQTEKCGSGIVADEDIKRGDFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAAECRRKLGVRPTKPKTSSDAALKLVAYQVYQNGGLHTVVPKYSHNCIGEVIRINHPTKERWCFGIIKRFDKYSKKHTILFEDGGVDFMDLSEVDWELVRL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3852g00022 345 ProSiteProfiles SET domain profile. 114 231 IPR001214 GO:0005515
Pral3852g00022 345 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0042054
Pral3852g00022 345 Pfam SET domain 125 230 IPR001214 GO:0005515
Pral3852g00022 345 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 291 IPR025787 -
Pral3852g00022 345 FunFam Histone-lysine N-methyltransferase 30 269 - -
Pral3852g00022 345 ProSiteProfiles Post-SET domain profile. 237 253 IPR003616 -
Pral3852g00022 345 SMART PostSET_3 237 253 IPR003616 -
Pral3852g00022 345 SUPERFAMILY SET domain 39 249 IPR046341 -
Pral3852g00022 345 SMART set_7 114 237 IPR001214 GO:0005515
Pral3852g00022 345 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0042054
Pral3852g00022 345 Gene3D SET domain 35 269 IPR046341 -
Pral3852g00022 345 PANTHER SET DOMAIN PROTEINS 30 266 - -
Pral3852g00022 345 CDD SET_ASHR3-like 115 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3852g00022 Pral-Chr3852 145541 152948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3852g00022 87 249 C2H2 Transcription Factor Family AT2G23740 34.973 1.38e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral3852g00022 SET 5.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3852g00022 - - gmx:100808183 595.89