Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3852g00020 ATGGTCGTTTGCGGTGGGAAGCCTTTGAAGCGGATGAAGTGTAGAGTCACGGCTGATTTCTACGATTTTCTCACGTTTCCATCCCTTTCAGTCGCTGAAGAAGGAGATTTCTCCGGTGGACCCTTCCGGACAAACGTGAGATCTTTTCTATCAAAGCACGCGCTGCTTCCGCCGCCTTCGGCTCTGCTCCCTCACCTGCTGACGTGGCAGATCTTGTTCCGAGTCGGTGACCTGACGGACGGCCCGGAATCGAGTCCAGCGGTGGTTTGTCTAGACGTTTTTGAAGAGGATGTGGCCAGATCTAGATCCGTCTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGCCATCCAGTATGCGGAAAACGTTACCATTTTATAATCAAGGCCGATGGTACTTCCATTGGTGGGCACCAAAAGCCATGTATGTGCTGTGGAGATATATTGCACTTGTCAGAATCCAAGTGCAAGTCTTGCAACCATGTGACAACCACGGTTGATGTTGAAAACTGGGTCTATCACCAGTTAGAAAGCACAACTCATCTTTTACATGGTGTAGTCCATGCTAATGGTTATGGTCACCTTCTTCGAGTGAATGGCAGAGAAGGTGGCTCTAAATTTCTTTCTGGGTGCCATATCATGGACTTCTGGGATCGCCTCTGCAAGACGCTTGGAGTTAGAAAAGTTAGCGTGATGGATGTGTCAAAGAAGTATGGGTTGGAGTACCGGCTGCTCCATGCTATTACAAAAGGACTCCCTTGGTATGGTGATTGGGGTTATCAATTTGGTTCTGGTAGCTACGGTCTTACACACGAATCATACAAGTCTGCTGTTGAATTCCTTTCCAATCTGCCCTTGTCCACCTTTCTGTCCCAGAAATGTGATAGTCGTGTCCAAGACATGATCTCATATTACCAGTCTTTGTCAAAGAAGGAGCTTGTAAATATAAGGGACTTCTTTAGTTTTTTAATGGGTTTGATTCATGATGTTCGCAAGACTGCTGCTTCAAAGAATATTGATGACGTCACCTGCAAGAAACGACGTGTGAATGCTACAGGAGTGCCTTCTTCATGGACTAAGAGTGACATTGAATGCGTGGAGGAGGCCATGCTCAGAGTGCTGCGAGCTGTGTCTGGGTCCAATTGGGTGAGCTGGCGTGCTCTAAGGGGCGCTGTGTGCAAGGTGGCCTCTCCAGAACTGCTGGATTATTGCCTCAGAGAATTGGGAGGAAAAGTCGTTCTTGGTGCAATGGTGAATACCCGATGCAATCCTGTTACTGGCGCTTTTGAGTACAGACTGGAGACAGGGAACAATTCTCGCTTTGGACTTGCAAGCAATCTTTCTTCAGGCCCAAAGCATCCATCTGAAGTGAGTCTTCTACATGACTTGAGGTACTTGTATAATTCTCTTCTTCATCCTCAGATGATGTTGAGCTATGTTCCAGAGGAGACAAGGGCAATTGCCATGAGTTCTGCTCAGAAACTTATCGACTGCAAGCAGTTTGTAAAGGATTATAAACCTGAGATGTTGCCACTGACAAGCCCCTCTAAGATACGCTTCTCATGTCAAATAGAACTAGAAGATGAATCTGAAGAATTTTCCGCGCACATTCCGCCAGAATTAGTTATCCTCCCTGTAAATGCTACCGTGTCTGACCTCAAAATTGAAGCGGCAAATGTTTTTCAAGATGTATATGTCATGTTTAGAGGACTTCAAATTGATGAGATACTTGGCTATAATGTCGAAGATTCCTCCCAGGCCAAGCACTTGTCAGGATCTATGATCAACGCAGTCCGGCTGCGGGGAAGATGCATTGGCAAGAATGAGTTGAACGAATTCCAAATGGAGCGGGGCATTGGGAAGTGGACTGTGGACTGCAGCTGTGGGGCCAAGGACGATGATGGGGAGAGAATGTTGGCTTGTGATATATGTGGGGTGTGGAGACACACAAGGTGTTCTGGTATTCATGATATAGATCCTGTTCCTGCACGGTTTGCTTGTCCAAGGTGCCAAAGCTGTGATGCCAAACTCAAATCCAGTGGACCCTGCGAGGGTGTGATTGTGAATAAGAACTGCTTTGGAAACTGCTTGCTTGTGTCATCTGATGTTCGTTGA 2115 0.4695 MVVCGGKPLKRMKCRVTADFYDFLTFPSLSVAEEGDFSGGPFRTNVRSFLSKHALLPPPSALLPHLLTWQILFRVGDLTDGPESSPAVVCLDVFEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGTSIGGHQKPCMCCGDILHLSESKCKSCNHVTTTVDVENWVYHQLESTTHLLHGVVHANGYGHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAITKGLPWYGDWGYQFGSGSYGLTHESYKSAVEFLSNLPLSTFLSQKCDSRVQDMISYYQSLSKKELVNIRDFFSFLMGLIHDVRKTAASKNIDDVTCKKRRVNATGVPSSWTKSDIECVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLRELGGKVVLGAMVNTRCNPVTGAFEYRLETGNNSRFGLASNLSSGPKHPSEVSLLHDLRYLYNSLLHPQMMLSYVPEETRAIAMSSAQKLIDCKQFVKDYKPEMLPLTSPSKIRFSCQIELEDESEEFSAHIPPELVILPVNATVSDLKIEAANVFQDVYVMFRGLQIDEILGYNVEDSSQAKHLSGSMINAVRLRGRCIGKNELNEFQMERGIGKWTVDCSCGAKDDDGERMLACDICGVWRHTRCSGIHDIDPVPARFACPRCQSCDAKLKSSGPCEGVIVNKNCFGNCLLVSSDVR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3852g00020 704 SMART PHD_3 625 671 IPR001965 -
Pral3852g00020 704 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Pral3852g00020 704 CDD PHD_MMD1_like 625 670 - -
Pral3852g00020 704 SUPERFAMILY FYVE/PHD zinc finger 616 671 IPR011011 -
Pral3852g00020 704 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 18 681 - -
Pral3852g00020 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 676 IPR013083 -
Pral3852g00020 704 Pfam PHD-finger 626 673 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3852g00020 Pral-Chr3852 137108 142708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3852g00020 85 677 PHD Transcription Factor Family AT5G22260 30.414 1.04e-86 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral3852g00020 PHD 4.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3852g00020 K26271 - gmx:100818189 1041.18