Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3852g00018 ATGGAGTCTAGAAACGTTCATATCGATCACCAAAAGAGGCCAAGCGTGGAGGAGCCTGGTCCAGAGAAGAAGAATAAGAAGCAGAAGAAGACGATAATAAGTTACAAAGAATGCCTGAAGAACCATGCAGCTTCAATAGGAGGAAATGCAACAGATGGGTGTGGCGAGTTCATGGCTGCAGGAGAAGAAGGCACACCTGAATCTCTCAAATGCTCAGCCTGCAAATGCCACAGAAACTTCCACAGAAAACACTTTGAATCTGAAGATTCTGATGATGATACGCCTTCTTCTCCATATTATGATTCTCGTCGCCATCACCATCACCATCATCATCATCTTCTTAATCTTCCATCACAGATGATGATGCTTCCAAATAATGATGATCATGATCAGGTCGAGATGAAACCCTTATTGACCCATGATTTGTGTCTCACAAGTTATAATAAAAGTGGGTCAAATGGTTCATCAGATCATGAATCTGATGAAAAGAGGGTGGTAATGAGGAAGAGGTTCAGGACCAAGTTCAGTGAAGAGCAGAAGGAGAAGATGCTGAGATTTGCAGAGAAGGTTGGGTGGAAGATGCAGAAAGTGGATGAATCCATGGTTCAGCAATTCTGTGAAGAAGCTGGAATCAAGAGAAGAGTGCTCAAAGTGTGGATGCATAATAACAAGAACAATCTTGCCAAGAGAAATCTCTTATCCACTAGCTGA 711 0.4233 MESRNVHIDHQKRPSVEEPGPEKKNKKQKKTIISYKECLKNHAASIGGNATDGCGEFMAAGEEGTPESLKCSACKCHRNFHRKHFESEDSDDDTPSSPYYDSRRHHHHHHHHLLNLPSQMMMLPNNDDHDQVEMKPLLTHDLCLTSYNKSGSNGSSDHESDEKRVVMRKRFRTKFSEEQKEKMLRFAEKVGWKMQKVDESMVQQFCEEAGIKRRVLKVWMHNNKNNLAKRNLLSTS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3852g00018 236 Gene3D - 151 230 - -
Pral3852g00018 236 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 84 IPR006456 -
Pral3852g00018 236 MobiDBLite consensus disorder prediction 85 101 - -
Pral3852g00018 236 MobiDBLite consensus disorder prediction 1 31 - -
Pral3852g00018 236 FunFam Zinc-finger homeodomain protein 2 155 229 - -
Pral3852g00018 236 NCBIfam homeobox domain, ZF-HD class 168 225 IPR006455 -
Pral3852g00018 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 226 - -
Pral3852g00018 236 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 35 84 IPR006456 -
Pral3852g00018 236 Pfam ZF-HD protein dimerisation region 33 84 IPR006456 -
Pral3852g00018 236 SUPERFAMILY Homeodomain-like 156 229 IPR009057 -
Pral3852g00018 236 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3852g00018 Pral-Chr3852 121154 121989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3852g00018 26 230 ZF-HD Transcription Factor Family AT2G02540 48.611 1.15e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral3852g00018 ZF-HD_dimer 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3852g00018 - - pcin:129302889 310.071