Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3852g00008 ATGGAGAATGAAAATGATGTGAATCATGGAGATGATGTGAATGACATAGAAAACGAAGGTCCAGTGGATAGGAAGGACAATGGGAGGTACTGGTCAGAGTTTTCTGAAAGAAACATGACATATACAGAGCCACTTCTGGTGAAGAGGATCAACACCACCTCGCAGATCGCCATAGTTGGTGCCAACCTTAGCCCCATTGAAAGCCTTGATTATGAGATATTTGAGAATGAAATATTTAAACAGGACTGGAGATCAAGGAGCAAGATTCAGATATTCCAGTATGTGATACTTAAGTGGGCATTTGCTGCTCTTATTGGATTAGGCACTGGTCTACTTGCCTTCCTCAATAATATTGCCGTTGAGAATATTGCTGGTTTCAAGCTGCTTCTGGCGTCCAACCTCATGTCCCAGCACAGATACATTCTAGCATTTGTGGCATTAGCTGGTTGCAATATAGGTTTAGCAGCGGCGGCTGGATCTCTTTGTGCTTTCATTGCTCCAGCTGCAGCAGGCTCTGGTATTCCTGAGGTGAAAGCCTATCTCAATGGTATTGATGCTCATAATATACTGGCTCCAACCACTCTTTTTGTGAAGGTTTTTGGTGCCATCCTTGGAGTTTCTGCTGGATTTGCGGTGGGCAAAGAGGGGCCTATGGTACACACAGGTGCATGCATTGCTTCCTTGTTAGGGCAGGGTGGATCGCGCAAGTATCGCTTGACTTGGATGGGGCTAAGATATTTCAAAAATGATCGAGACCGGCGAGACATGATTACTTGTGGCGCTGCAGCTGGTGTTGCTGCTGCATTTCGTGCTCCAGTAGGTGGTGTTCTCTTTGCCCTTGAAGAGGCCGCTTCCTGGTGGCGGAGTGCTCTCCTTTGGAGGACATTTTTCACTACCGCAGTAGTTGCTATTGTTTTGAGAGCCGGAATTCAGTTCTGTGCCACTGGGAAATGTGGGCTCTTTGGTGAAGGTGGTTTGATAATGTACGATGTCAGTGCAGCCAAAGTATCATACAATGGTGCTGACATACTAGCAGTATTACTCTTAGGAACCCTCGGAGGCATTCTCGGAAGCATATATAATTACTTTGTGGATAAGGTTGTTCGGACATATAGCATCCTGAACGAAAAAGGTCCAGGTTTCAAAATTCTCATTGTTGTCGCAATTGCTTTTTTGACCTCATGCTGTGCTTACGGCTTACCATGGTTGGCAACGTGCATCCCTTGTCCTGATGATCCGACAGTAAGCTGTCCCACTGTTGATGAGTCTGGCAACTACAAGAACTTTCAATGTCCACCAGGATATTACAATGATCTCGCTTCTCTTTTTCTAAATACAAATGATGATGCTATTCGCAACCTATTCAGCACGAGGACATTCCAGGAATTCCACATCTCCAGTCTCTTTATCTTCTTTGTAACTATTTACTTTCTTGGGGTAGTCACATATGGTATTGCTATTCCATCCGGCCTTTTCATTCCTGTGATATTGGCGGGTGCTGCATATGGCCGGCTGGTAGGGAGACTATTTGAATCGATCTCAAAACTTGATACTGGATTATACGCCCTCCTTGGAGCTGCCTCCTTCCTTGGTGGCACCATGAGAATGACAGTATCCCTTTGTGTTATATTGCTAGAACTCACCAATGATCTCTTGTTACTTCCTCTTGTGATGTTGGTCTTGTTAATCTCAAAAACTGTGGCTGATGGCTTCAACAAGGGTGTCTACGATCAAATACTGAAGATCAAAGGACTTCCATATATGGAGGCCCATGCAGAACCTTATATGAGGAATTTAGTTGCACGAGATGTTGTCTCTGGCCCATTAGTCACTTTCTCGGGCATTGAAAGAGTAGGGAATATACTACATGCTCTGAAAACCACAGGTCATAATGGGTTTCCTGTCATCGATGAACCGCCATTCTCAGATGCACCAGAGTTGTGTGGGCTTGTTCTTAGGTCTCATCTGCTAGTCCTATTGAAGGGGAAGACCTTCTCAAAAGAGAGGGTGCTTGCAAGTCGAAACATCTTACAAAGAATTTCTGCATTAGATTTTGCAAAGGCAGGATCGGGGAAAGGAATCAAACTAGAGGATCTAGATATTGAAGAGGAAGAGATGGATATGTATGTTGATCTTCACCCAATTTCGAATGCATCCCCATACACAGTGGTTGAGACCATGTCACTTGCTAAAGCCGCTATTCTTTTCCGTCAACTTGGTCTTAGGCACATGTGTGTGGTCCCCAAGAGTCAAGGGAGACCTCCCGTTGTTGGGATTCTGACACGCCATGACTTCATGGAGGAGCATGTCCATGGACTTTACCCCAATATGAAACCTCACAGGTGGACTGAGTGA 2355 0.4497 MENENDVNHGDDVNDIENEGPVDRKDNGRYWSEFSERNMTYTEPLLVKRINTTSQIAIVGANLSPIESLDYEIFENEIFKQDWRSRSKIQIFQYVILKWAFAALIGLGTGLLAFLNNIAVENIAGFKLLLASNLMSQHRYILAFVALAGCNIGLAAAAGSLCAFIAPAAAGSGIPEVKAYLNGIDAHNILAPTTLFVKVFGAILGVSAGFAVGKEGPMVHTGACIASLLGQGGSRKYRLTWMGLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAGIQFCATGKCGLFGEGGLIMYDVSAAKVSYNGADILAVLLLGTLGGILGSIYNYFVDKVVRTYSILNEKGPGFKILIVVAIAFLTSCCAYGLPWLATCIPCPDDPTVSCPTVDESGNYKNFQCPPGYYNDLASLFLNTNDDAIRNLFSTRTFQEFHISSLFIFFVTIYFLGVVTYGIAIPSGLFIPVILAGAAYGRLVGRLFESISKLDTGLYALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADGFNKGVYDQILKIKGLPYMEAHAEPYMRNLVARDVVSGPLVTFSGIERVGNILHALKTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKTFSKERVLASRNILQRISALDFAKAGSGKGIKLEDLDIEEEEMDMYVDLHPISNASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMEEHVHGLYPNMKPHRWTE 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3852g00008 784 Pfam Voltage gated chloride channel 155 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral3852g00008 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 601 768 - -
Pral3852g00008 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 771 - -
Pral3852g00008 784 PRINTS Plant CLC chloride channel signature 72 80 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral3852g00008 784 PRINTS Plant CLC chloride channel signature 439 455 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral3852g00008 784 PRINTS Plant CLC chloride channel signature 283 291 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral3852g00008 784 PRINTS Plant CLC chloride channel signature 297 307 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral3852g00008 784 PRINTS Plant CLC chloride channel signature 315 322 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral3852g00008 784 SMART cbs_1 608 661 IPR000644 -
Pral3852g00008 784 SMART cbs_1 719 770 IPR000644 -
Pral3852g00008 784 ProSiteProfiles CBS domain profile. 715 776 IPR000644 -
Pral3852g00008 784 FunFam Chloride channel ClC3 90 411 - -
Pral3852g00008 784 Gene3D Clc chloride channel 90 588 - -
Pral3852g00008 784 Gene3D - 589 775 IPR046342 -
Pral3852g00008 784 SUPERFAMILY Clc chloride channel 76 590 IPR014743 -
Pral3852g00008 784 MobiDBLite consensus disorder prediction 1 28 - -
Pral3852g00008 784 SUPERFAMILY CBS-domain pair 592 768 IPR046342 -
Pral3852g00008 784 PRINTS Chloride channel signature 537 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral3852g00008 784 PRINTS Chloride channel signature 198 217 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral3852g00008 784 PRINTS Chloride channel signature 487 507 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral3852g00008 784 PRINTS Chloride channel signature 519 535 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral3852g00008 784 PRINTS Chloride channel signature 262 281 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral3852g00008 784 PRINTS Chloride channel signature 167 184 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral3852g00008 784 PRINTS Chloride channel signature 575 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral3852g00008 784 Pfam CBS domain 718 767 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3852g00008 Pral-Chr3852 53598 60409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3852g00008 6 779 Ion Channels AT5G49890 72.165 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3852g00008 K05016 - jre:108982434 1240.33