Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3851g00007 ATGGATCAGAAAACACTGGCTGAAGGGGAACAAAACGTTTTGAATTTTAAGTGTGCGAAGATCCTTCATGGAGCTGATAAATCTATCGCTTGTCAGACTCCAGAGAAGACTAGTGAGCCCTTACCCGCCAAACTCAAGGAAGGATCCACACAGCTTCCAGAAACATACAAGGCTTTAGAAGATTTGTTTGACTCTATGAGTTGTTCACTGAGGTTGCTTCGTCTGTGCAAAAAATCTACCACGTTTCAAAACATCTGTTCCCAGGTTGAAGTTCTTGCTAAAAGAAAATTCTTGCACAGGGATCTTGGGCAGATAAAGTATATACTTCCTGAAGCCATATGCATAGAGAAGGTATTAGTACATGATAATAGAAACTTGTGTATGAAGCCTGATTTGAAGATCACCTTGGTACATGAGGTTGTGCTAGGACAATCCAGTGAAAATACTTATGTGGCTCTCCGGCAACTTTTTGGTTTTAGGCTGCTTGAGTTCTTCAATACGCATCCAGAGAATACTGATATCCCAGAAGCTACTCTACCAGAACCTTTTCAACAAAGAAATAGCTTGATTTGTGAGGACTTGCCTGTAGATCCTTCTATACAATCAACTTCCGATCAAAATCAACATCTATTACAGGAATGTCAGCCATATCCTTTAAAAAGGCATTTCTCAAAGAATAATGCTGTGTCAGAGACAGAAAATAACGTTGTAACAAGTCCAATTGGTCAGTCACATCATTCATCTGATTGCTTGGAAAATGAAGGAGGTGAAGGTGGCAGTGAATGGCAGAAAAAATGTACTACTTCATATTTGAAATCTGATAGCACAAATGATCAGGACATGGAAAAAGGACAGCAGAATGAATCATGTTCTATGGGATTCCAATGTAGTGTTGTTAATACACCAGCACGTCTGATTTGCTCTCCACAGTCTGTTAGTTGTGGTAGTTATGAAAGCTCTCATCTCAAGATTGCCTCATCCACAGATATGTTAACGACAGAGACACCTGCTCAGTCAACACCTAGAAGATTGGCACCCAGTTCTGATGTTAAACTTAAGATTGTGACCACCCAGAATTCAATCTCATGCAATAAGCATGTAAAAAGAGTTCTTTTTTCACATGAAGGTGATTATGATGGTGACAAGTTAGAATCAAGTAGAGATGCTTGTGATAACATCCCTGAAGATGGTCGAGCATGCACTGAGGATTTTAGTGTTTCTAATTTTGTTGTTTTATCTCAGAAGGTGGCTGAGTTCATTGATTGTTCTCATGAAAATACAAATCAAACACATGGTGGTGCAGCAACTGGGCAGCAGATGCCTTCATCGTTGCTTGGCCTTGTTGATGTGATATATTCTATATTTGGTTCCATCAAATGCTCTCCAATCACAAAAGAGGAGCTCCTGCACAAGATAATAATGAACAGTTTAGATTTTGTTGAGATGAGAGAAGCTGAAGAGCAGATTAATTTTCTTGAGAAGGTAGTGCCGGATTGGATCTACAAGAAGTTGGGCCCTAGTGGAGATACTATGTACTGTATTAAGGAAGTGCCAGATTTGGAGTCTGTTCGATCAAGGCTATCTAGCAATGGCATTAAGGCTTGA 1605 0.3975 MDQKTLAEGEQNVLNFKCAKILHGADKSIACQTPEKTSEPLPAKLKEGSTQLPETYKALEDLFDSMSCSLRLLRLCKKSTTFQNICSQVEVLAKRKFLHRDLGQIKYILPEAICIEKVLVHDNRNLCMKPDLKITLVHEVVLGQSSENTYVALRQLFGFRLLEFFNTHPENTDIPEATLPEPFQQRNSLICEDLPVDPSIQSTSDQNQHLLQECQPYPLKRHFSKNNAVSETENNVVTSPIGQSHHSSDCLENEGGEGGSEWQKKCTTSYLKSDSTNDQDMEKGQQNESCSMGFQCSVVNTPARLICSPQSVSCGSYESSHLKIASSTDMLTTETPAQSTPRRLAPSSDVKLKIVTTQNSISCNKHVKRVLFSHEGDYDGDKLESSRDACDNIPEDGRACTEDFSVSNFVVLSQKVAEFIDCSHENTNQTHGGAATGQQMPSSLLGLVDVIYSIFGSIKCSPITKEELLHKIIMNSLDFVEMREAEEQINFLEKVVPDWIYKKLGPSGDTMYCIKEVPDLESVRSRLSSNGIKA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3851g00007 534 PANTHER DNA REPLICATION FACTOR CDT1 39 528 IPR045173 GO:0003677|GO:0030174|GO:0071163
Pral3851g00007 534 Pfam DNA replication factor CDT1 like 52 116 IPR014939 -
Pral3851g00007 534 SUPERFAMILY "Winged helix" DNA-binding domain 49 183 IPR036390 -
Pral3851g00007 534 CDD Cdt1_m 33 182 IPR014939 -
Pral3851g00007 534 MobiDBLite consensus disorder prediction 238 263 - -
Pral3851g00007 534 Pfam DNA replication factor Cdt1 C-terminal domain 438 500 IPR032054 -
Pral3851g00007 534 Gene3D - 433 531 IPR038090 -
Pral3851g00007 534 SMART CDT1_2 52 181 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3851g00007 Pral-Chr3851 87338 91998 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3851g00007 51 527 Core DNA Replication Machinery Family AT2G31270 29.659 4.92e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3851g00007 K10727 - gmx:102670055 449.129