Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3848g00011 ATGGTGAGAAAGAAGAGAACTGAAGGTCCTAGCGGAGGTGAAAGCTCTGAGACTCACGAAAGTGGGGGAAGCGGAAGAGGTTCTCAGCGCCCTCCAGAAAGGAGTGCTCACAGCGGCTCACAGCAGTCAGCTGGTGGACCCCAAGGAGGTAGAGGCTGGTATCCTCAGGAGGGGGGGGGTTATGGTGGAGGACGTGGTCGTGGGTTACCCCAACAGCAGTATGGTGGCCCCCCTGATTATCAAGGCAGAGGGAGGGGAGGATCTTTTCAACAGGGGGGTCGTGGTGGATTTAGTGGTGGTCGGGGTGGTGCGGGCGGAAGCGGACGTGCTGGAGGGCCTTCATATGGTGTCCCATCCCGACCAGAAGTTCCCGAGCTGCACCAAGCAACCTCAGCTTCATATCAAGCTGGGGTGACTCCTCAGGCTGTTACATCTGAGGCCAGTTCTGTTTCACAGCTTTCTGAGACAACACAGTTGCAACAGCAAATGAAGCAGTTAACCATTCAACCAGAAGCTTCTTCTGCCCCACCAGCCTCAAGTAAATCAGTGAGGTTTCCCCTTCGGCCTGGAAAGGGTAGCTTTGGCACAAGATGTATAGTCAAAGCTAACCATTTCTTTGCTGAGTTACCAAACAAAGATCTTCACCAGTATGATGTAACCATAACTCCAGAAGTGCCATCCAGAGGTGTAAACCGTGCTGTTATGGAGGAGCTGGTTAGGCTGTATCGTGAGTCTCATCTAGGCATGAGACTACCTGCATATGATGGTCGCAAGAGCCTGTACACTGCTGGTCCTCTTCCTTTTGTTTCAAATGAGTTTAGAATCACTCTCATTGATGAAGAGGATGGAGCAGGAGCAGGAGCAGGAGCTCAAAGGAGAGTGAGGGATTTCAAAGTTGTGATAAAATTAGCTGCCCGAGCTGACCTTCATCACTTGGGAATGTTTTTGCAAGGAAGACAAACAGATGCACCTCAGGAAGCTCTTCAGGTTCTTGACATTGTTCTTCGTGAACTACCAACCACTAGGTATTGTCCTGTCGGAAGATCTTTCTATTCACCTGATATAGGTAGGAGGCAACCATTAGGTGAGGGTTTGGAGAGCTGGCGTGGGTTTTACCAAAGTATTCGTCCAACTCAGATGGGGTTATCTCTCAACATTGATATGTCGTCAACAGCGTTTATTGAACCCTTGCCAGTAATTGATTTTGTAACTCAGCTGCTGAACAGGGATGTCACCACCCGTCCATTATCCGATGCTGACCGTGTAAAGATCAAAAAAGCACTTCGTGGTGTCAAAGTTGAAGTAACACACCGTGGAAACATGAGAAGAAAATATCGCATTTCTGGCCTGACATCACAGGCAACTAGAGAGCTGACATTCCCTGTTGATGAGAGGGGGACTGTGAAATCTGTTGTGGAGTACTTTTATGAGACGTACGGATTTGTCATTCAACATACTCAGTGGCCTTGCTTGCAAGTGGGAAATACAAATAGACCAAACTATTTGCCAATGGAGGTTTGCAAGATTGTGGAAGGTCAACGGTACTCAAAGAGGTTGAATGAGAGGCAGATTACTGCTCTGCTTAAAGTCACCTGTCAGCGACCTCTTGATAGGGAGCGTGATATCATGCAGACGGTTCATCACAATGCATACCGTGAAGATCCTTATGCTAGAGAGTTTGGGATCAAAATCAGTGAGAAACTTGCACAAGTTGAAGCTCGCATTCTTCCTGCACCTTGGCTGAAGTATCATGATACAGGAAGAGAAAAAGATTGTCTCCCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGGGGGACTGTTAACAACTGGATCTGCATAAATTTTTCAAGGAATGTTCAAGAGAGTGTGGCCGGTGGCTTTTGTTATGAACTGGCACAGATGTGTTATATATCTGGCATGGCATTTAATCCAGAGCCAGTAGTTCCTGTGATCAGTGGCCGCCATGACCAGGTTGAGAAGGTTCTGAAATCCCGCTATCATGACGCCAAGGCAAAATTGAAGGATAAGGAGCTTGATCTGCTTATTGTTATTCTGCCTGATAACAATGGCTCTCTTTATGGTGATCTGAAACGTATTTGTGAGACGGAGCTTGGGGTTGTTTCCCAGTGCTGTTTAACAAAACATGTCTTTAAAATGAACAAGCAGTACCTTGCAAATGTTGCTTTAAAAATCAACGTGAAGGTTGGTGGAAGGAACACAGTGCTTGTCGATGCACTTTCAAGACGCATTCCTTTAGTTAGTGACCGACCCACAATTATATTTGGAGCTGATGTTACTCACCCACACCCTGGGGAGGATTCTAGTCCATCTATAGCAGCTGTTGTGGCTTCTCAAGATTGGCCTGAAATTACCAAGTATTCTGGTTTGGTTTGTGCTCAAGCACACAGGCAGGAGCTCATCCAAGACCTTTTCAAGCAGTGGCAAGATCCAGCGAGGGGGACAGTAACTGGTGGAATGATCAAGGATCTTCTCATATCTTTTCGGAGAGCCACAGGGCAGAAGCCACAACGCATCATATTTTACAGGGATGGTGTGAGTGAAGGACAATTTTACCAAGTCTTGCTTTTTGAGCTTGATGCTATCCGCAAGGCATGTGCATCATTAGAACCTAACTATCAGCCTCCTGTCACTTTTGTGGTGGTTCAAAAGCGCCATCACACGAGGCTGTTTGCTAACAACCATCATGATCGGCATTCAATTGACCGTAGTGGGAATATATTGCCTGGTACGGTTGTAGACTCCAAAATTTGTCATCCCACTGAGTTTGACTTCTATCTCTGCAGCCATGCTGGGATACAGGGTACAAGCCGACCTGCCCATTACCATGTATTATGGGATGAAAACAATTTTACTGCCGATGCACTTCAGACACTGACTAACAACCTCTGCTACACCTATGCAAGATGCACGCGATCCGTTTCAATCGTGCCTCCTGCATACTATGCACACTTGGCCGCATTCCGAGCTCGATTTTATATGGAACCAGCTACATCGGATAGCGAGTCAATGAGTGCTGCTGCTGGACGTGGAGGGGGTTTTGGTCCAGGACGTAGCACTCGTGCACCTGGTGCAAGTGCTGTGGTCAGGCCTCTTCCTGCTCTTAAAGAGAATGTGAAGAGGGTTATGTTTTATTGTTAA 3174 0.4704 MVRKKRTEGPSGGESSETHESGGSGRGSQRPPERSAHSGSQQSAGGPQGGRGWYPQXEGGGYGGGRGRGLPQQQYGGPPDYQGRGRGGSFQQGGRGGFSGGRGGAGGSGRAGGPSYGVPSRPEVPELHQATSASYQAGVTPQAVTSEASSVSQLSETTQLQQQMKQLTIQPEASSAPPASSKSVRFPLRPGKGSFGTRCIVKANHFFAELPNKDLHQYDVTITPEVPSRGVNRAVMEELVRLYRESHLGMRLPAYDGRKSLYTAGPLPFVSNEFRITLIDEEDGAGAGAGAQRRVRDFKVVIKLAARADLHHLGMFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDIGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVTTRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTVKSVVEYFYETYGFVIQHTQWPCLQVGNTNRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPLDRERDIMQTVHHNAYREDPYAREFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQESVAGGFCYELAQMCYISGMAFNPEPVVPVISGRHDQVEKVLKSRYHDAKAKLKDKELDLLIVILPDNNGSLYGDLKRICETELGVVSQCCLTKHVFKMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYSGLVCAQAHRQELIQDLFKQWQDPARGTVTGGMIKDLLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRHSIDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPATSDSESMSAAAGRGGGFGPGRSTRAPGASAVVRPLPALKENVKRVMFYC 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3848g00011 1058 Pfam Argonaute linker 2 domain 538 584 IPR032472 -
Pral3848g00011 1058 Gene3D - 576 749 - -
Pral3848g00011 1058 Gene3D - 755 1058 IPR036397 GO:0003676
Pral3848g00011 1058 SUPERFAMILY Ribonuclease H-like 672 1008 IPR012337 -
Pral3848g00011 1058 MobiDBLite consensus disorder prediction 31 47 - -
Pral3848g00011 1058 SUPERFAMILY PAZ domain 201 549 IPR036085 GO:0005515
Pral3848g00011 1058 Pfam Piwi domain 687 1006 IPR003165 GO:0003676
Pral3848g00011 1058 SMART PAZ_2_a_3 402 534 IPR003100 GO:0005515
Pral3848g00011 1058 ProSiteProfiles Piwi domain profile. 686 1007 IPR003165 GO:0003676
Pral3848g00011 1058 CDD Piwi_ago-like 556 1006 IPR045246 -
Pral3848g00011 1058 ProSiteProfiles PAZ domain profile. 398 512 IPR003100 GO:0005515
Pral3848g00011 1058 Pfam N-terminal domain of argonaute 198 336 IPR032474 -
Pral3848g00011 1058 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 176 1008 - -
Pral3848g00011 1058 MobiDBLite consensus disorder prediction 127 181 - -
Pral3848g00011 1058 Pfam PAZ domain 402 527 IPR003100 GO:0005515
Pral3848g00011 1058 SMART DUF1785_2 345 397 IPR014811 -
Pral3848g00011 1058 Pfam Glycine-rich region of argonaut 76 176 IPR024357 -
Pral3848g00011 1058 FunFam protein argonaute 10-like 755 1058 - -
Pral3848g00011 1058 FunFam Argonaute 10 576 749 - -
Pral3848g00011 1058 FunFam Protein argonaute-2 391 517 - -
Pral3848g00011 1058 Pfam Argonaute linker 1 domain 346 396 IPR014811 -
Pral3848g00011 1058 SMART Piwi_a_2 686 1007 IPR003165 GO:0003676
Pral3848g00011 1058 Pfam Mid domain of argonaute 595 670 IPR032473 -
Pral3848g00011 1058 Gene3D paz domain 391 516 - -
Pral3848g00011 1058 CDD PAZ_argonaute_like 397 511 - -
Pral3848g00011 1058 MobiDBLite consensus disorder prediction 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3848g00011 Pral-Chr3848 90564 97735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3848g00011 80 1058 Eukaryotic Initiation Factors Gene Family AT1G48410 81.054 0.0 1610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3848g00011 K11593 - gmx:100780375 1696.02