Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3848g00009 ATGGCCAGGGTCGGATTACCACCGGGTTTTCGGTTCCATCCGACCGACGAAGAGCTTGTCAATTATTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGACATCATTCCTGAGATTGATCTCTACAAATGTGAGCCTTGGGAACTTGCAGACAAGTCATTTCTGCCAAGTAGAGATCCAGAGTGGTACTTCTTTGGACCCAGAGACAGGAAATACCCTAATGGTTTCAGAACTAACAGAGCCACTAGAGCTGGGTACTGGAAGTCCACTGGCAAAGACAGAAGGGTCACTTCCCAAAACAGACCCATTGGCATGAAGAAAACTCTTGTTTACTACAGAGGCAGAGCCCCTCAAGGCATCAGAACTGACTGGGTCATGCATGAGTATCGCCTCGATGATAAAGAATCCGAGGACACCTCCGGAATTCAGGATACTTATGCATTGTGCCGTGTGTTCAAGAAAAATGGAATCTGCTCTGAAATTGAAGAGCAAGGGCAAAGTAGTTTAACACTAATTGAGAGCTCACAAACCATAAACATTAATAATGAAAGTGAAACCATGTCTCCAGATCCAGCTGGGGCATCTTCATGCTTGGAGGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGATGATGCATGGTATCCTTCTAATGCAGCCATGGCAGGCTGTGAAGAAGTTTCTCACTTTACATTCACAAACTGA 717 0.4449 MARVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEIDLYKCEPWELADKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTSQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKESEDTSGIQDTYALCRVFKKNGICSEIEEQGQSSLTLIESSQTININNESETMSPDPAGASSCLEEEDKDDSWMQFITDDAWYPSNAAMAGCEEVSHFTFTN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3848g00009 238 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Pral3848g00009 238 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 186 - -
Pral3848g00009 238 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Pral3848g00009 238 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Pral3848g00009 238 FunFam Nac domain-containing protein 86 15 159 - -
Pral3848g00009 238 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3848g00009 Pral-Chr3848 67415 71034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3848g00009 1 227 NAC Transcription Factor Family AT3G17730 77.083 1.11e-130 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral3848g00009 NAM 9.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3848g00009 - - gmx:100784495 439.113