Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3848g00004 ATGTTCAACAACTGTGGCATGGCCAGTAACTGCCATCCAGACGGAAGCACAAAATCTGAAAATGTTGTCTGCAGAAAGGATATAGCTACTACAGGAGAAGATTTTACCCCCAAGGTAAGGAAACCATATACCATTACTAAGCAAAGGGAAAAGTGGACAGAGGAGGAGCACCAGAAGTTCCTTGAAGCTTTGAAATTGTATGGCCGTGGTTGGCGTCAAATAGAAGAACATGTAGGTACCAAAACCGCAGTTCAGATTCGAAGCCATGCGCAGAAGTTCTTCTCTAAGGTTGCGCGGGAATCTGAGGGCAGCACTGAAAGTTCTATAAAGCCAATTGACATACCGCCTCCCCGGCCAAAAAGGAAACCGTTGCATCCATATCCTCGTAAATCAGCTGACTCGTTCAAAGGACACTCAAATGAATCAGAAAGATCTCCGTCTCCGAACCTGTCAGCTACAGGGAAAGACACCCAATCTCCAACTTCAGTGTTATCTGCGTTTGGATCAGCATTTTCTGAACAGAAAAATAGATGTCCATCCCCAAATTCTTGCACTACTGACATCCACTCGGTCAGTTTATCACCGGCTGGAAAAGAAAATGATTGTATTACATCCAATTCATCCGAGGAGGAAGAGAAGGGATGTTTAGCTTCAGTCCCATCAATAGCTGATTTGAAGACAGATCGGTCCCTGAAGGTTGAGTTGAAGTCCACGAAAAATGAGAATTCTACAGGAGATGCTGCCAAAATTCCTCATGTCACAAGCATCAAGCTTTTTGGAAGAACTGTCTCCATGACAAATCATCAGGAGTCAGTGAATATAGAAGAGAAAATTCAGTCAGTTATATGTAAGGAGAACCTTTGCTCTGTTAAGTCTGGATTTGACGATTCCTTACCATGCTGGAATTTACGCCCAAGTCTTCCGGATTTAGACCTTGGGCTGCGCAATGAAATTTTAAATCTCGCACCCCTTCATCATCCCTCCATCAAAGAGAGAACGATTGAGAAGGAAAGTCACCGTATTGATTCTAACGCTGAATCAGTTAGTGAAATGGAAAATGGAGACAAGTTGGATGCTATTGATTCTCAAAGTCAATCATCCCATCATTCCAAGTCTCCACGAGGGTTCGTACCATATAAAAGATGTTTAGCTGAGAGAGACGTGAATGCGTTTGTTGATGGATTGGAAGAGAGGGAGGGACAACGAACTCGAGTGTGCTCATAG 1224 0.4355 MFNNCGMASNCHPDGSTKSENVVCRKDIATTGEDFTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVARESEGSTESSIKPIDIPPPRPKRKPLHPYPRKSADSFKGHSNESERSPSPNLSATGKDTQSPTSVLSAFGSAFSEQKNRCPSPNSCTTDIHSVSLSPAGKENDCITSNSSEEEEKGCLASVPSIADLKTDRSLKVELKSTKNENSTGDAAKIPHVTSIKLFGRTVSMTNHQESVNIEEKIQSVICKENLCSVKSGFDDSLPCWNLRPSLPDLDLGLRNEILNLAPLHHPSIKERTIEKESHRIDSNAESVSEMENGDKLDAIDSQSQSSHHSKSPRGFVPYKRCLAERDVNAFVDGLEEREGQRTRVCS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3848g00004 407 Pfam Myb-like DNA-binding domain 49 92 IPR001005 -
Pral3848g00004 407 ProSiteProfiles SANT domain profile. 47 98 IPR017884 -
Pral3848g00004 407 MobiDBLite consensus disorder prediction 115 140 - -
Pral3848g00004 407 MobiDBLite consensus disorder prediction 97 216 - -
Pral3848g00004 407 ProSiteProfiles Myb-like domain profile. 44 94 IPR001005 -
Pral3848g00004 407 Gene3D - 51 98 - -
Pral3848g00004 407 PANTHER SWI/SNF COMPLEX-RELATED 23 342 - -
Pral3848g00004 407 CDD SANT 51 94 IPR001005 -
Pral3848g00004 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 98 IPR017930 -
Pral3848g00004 407 FunFam protein REVEILLE 6 isoform X1 51 99 - -
Pral3848g00004 407 MobiDBLite consensus disorder prediction 141 203 - -
Pral3848g00004 407 SUPERFAMILY Homeodomain-like 43 98 IPR009057 -
Pral3848g00004 407 SMART sant 48 96 IPR001005 -
Pral3848g00004 407 MobiDBLite consensus disorder prediction 332 352 - -
Pral3848g00004 407 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 96 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3848g00004 Pral-Chr3848 22329 25700 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral3848g00004 Myb_DNA-binding 7.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3848g00004 - - pcin:129319842 637.876