Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3847g00005 ATGGAGTACGGGAGTGGAGGCGGTGGTGGGTCCCCCGGGGACCACCATCACCACCACCACCACCTGCTGCACGACGGTTCTGATTCACAGAGGAACAAGAAGCGATACCATCGTCACACAGCTAACCAGATTCAGAGGCTTGAATCAATGTTCAAGGAGTGCCCCCACCCAGATGAAAAGCAGAGATTGCAGTTAAGCAGGGAACTAGGCTTGGCCCCTAGGCAGATCAAGTTCTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAGAGGGCTGATAACTGTGCCCTTAGAGCAGAGAATGACAAGATTCGATGCGAGAACATAGCTATCAGAGAGGCCCTCAAAAATGTCATTTGCCCTTCTTGTGGTGGCCCTCCTCTTCACGAGGATTCCTATTTCGACGAGCAAAAGTTGCGTTTGGAGAATGCTCAATTGAAAGAAGAGCTCGATAGAGTATCTAGCATTGCGGCTAAATACATAGGAAGACCGATTTCTCAGCTCCCTCCTGTGCAGCCTATTCATATTTCATCTCTGGACTTGTCGATGGCAAGTTTTGGGAGCCAGACTATGATGGGTGGTCCCTCCCTTGATCTCGATCTTCTGCCTGGGAGTTCTTCATCGGTTCCGAGCTTGCCTTATCAGGCGGCCTCATTTTCCGACGTCGACAAGTCCCTCATGTCTGACATTGCTGGAAATGCCATGGATGAGTTGCTCAGGCTTTTGCAGACTAATGAACCCTTGTGGATGAAGTCAGGCACGGATGGGAGAGATGTTCTTAATCTTGACGCTTACGGAAGCATGTTTCCCGATCGAGTAGTCACCTCAAGAACCCCAATGTTTCGGGTCGAAGCGTCTCGAGATTCTGGAGTTGTGATTATGAATAGCTTGGCTTTGGTCGACATGTTTATGGACCCT 924 0.5043 MEYGSGGGGGSPGDHHHHHHHLLHDGSDSQRNKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPLHEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASFGSQTMMGGPSLDLDLLPGSSSSVPSLPYQAASFSDVDKSLMSDIAGNAMDELLRLLQTNEPLWMKSGTDGRDVLNLDAYGSMFPDRVVTSRTPMFRVEASRDSGVVIMNSLALVDMFMDP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3847g00005 308 Pfam Homeodomain 33 88 IPR001356 GO:0003677
Pral3847g00005 308 SUPERFAMILY Homeodomain-like 12 90 IPR009057 -
Pral3847g00005 308 FunFam Homeobox-leucine zipper protein HDG1 20 106 - -
Pral3847g00005 308 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Pral3847g00005 308 ProSiteProfiles START domain profile. 222 308 IPR002913 GO:0008289
Pral3847g00005 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 31 308 IPR042160 -
Pral3847g00005 308 Gene3D - 18 104 - -
Pral3847g00005 308 Coils Coil 138 158 - -
Pral3847g00005 308 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Pral3847g00005 308 SMART HOX_1 32 94 IPR001356 GO:0003677
Pral3847g00005 308 CDD homeodomain 33 91 IPR001356 GO:0003677
Pral3847g00005 308 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3847g00005 Pral-Chr3847 67028 68253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3847g00005 28 307 Homeobox Transcription Factor Family AT1G73360 69.231 1.31e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral3847g00005 Homeodomain 2.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3847g00005 K09338 - cit:102613958 450.669