Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3846g00012 ATGTGTAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAACTTCGAGAGTTGGTGGAGCGTTATGGACCTCATAACTGGAACGCCATAGCTGAAAAGCTTCGAGGAAGATCAGGGAAGAGTTGCAGGCTGAGGTGGTTCAATCAACTGGACCCAAGAATAAACAGGACTCCATTCACTGAGGAAGAAGAAGAGAGGCTGATTGCTTCTCACAGGATCCATGGAAACAGATGGGCTGTGATTGCGAGGCTTTTTCCAGGACGAACTGATAATGCTGTCAAGAATCACTGGCACGTCATGATGGCCAGGATTCGCAGAGAAAGGTCCAAGCTTTATGCCAAGCAACGCCCTCATCATCATCACCTCACTACAGTAACATCATCGGATCCTGCTCCTGATCATCAGGATCGTCGAACAAACTATGATCATCATACAAAGACGACGACTAGTCCTATTCTTGTTCCTGCTTTTGTTCAGAAATACTATGACAAGAATGTTTTCCCAGCTTATTCTCTCCCTTATAACCCTTTCCTTCAATTCCCCAACAAGTTTCATCATCAACTTCAACGTCCATCTTGCTGTTCATCGATTCTTCATGATAAAAGTGAATCAGTTGAGTTCTACGACTTTCTTCAAGTGAACACTGATTCGAATAATAGAAGCGAGGTGACAGACAATGCGAGAAGAGAGGACGAGGAAGTGAATCAAGATAGTGAACATCATAATATTGTGGGAGGGAGACAGAACAAAGACGATGGTGGTGATGGTGCTCGGTTTATCGATTTTTTGTCTGTTAATGAAACCTCCTAG 810 0.4444 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRTPFTEEEEERLIASHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARIRRERSKLYAKQRPHHHHLTTVTSSDPAPDHQDRRTNYDHHTKTTTSPILVPAFVQKYYDKNVFPAYSLPYNPFLQFPNKFHHQLQRPSCCSSILHDKSESVEFYDFLQVNTDSNNRSEVTDNARREDEEVNQDSEHHNIVGGRQNKDDGGDGARFIDFLSVNETS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3846g00012 269 FunFam MYB transcription factor 4 55 - -
Pral3846g00012 269 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Pral3846g00012 269 Gene3D - 57 121 - -
Pral3846g00012 269 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Pral3846g00012 269 Gene3D - 4 55 - -
Pral3846g00012 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Pral3846g00012 269 MobiDBLite consensus disorder prediction 115 135 - -
Pral3846g00012 269 PANTHER MYB PROTEIN-RELATED 4 152 - -
Pral3846g00012 269 SMART sant 55 103 IPR001005 -
Pral3846g00012 269 SMART sant 3 52 IPR001005 -
Pral3846g00012 269 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Pral3846g00012 269 MobiDBLite consensus disorder prediction 218 255 - -
Pral3846g00012 269 Pfam Myb-like DNA-binding domain 7 67 - -
Pral3846g00012 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Pral3846g00012 269 CDD SANT 7 48 IPR001005 -
Pral3846g00012 269 CDD SANT 58 101 IPR001005 -
Pral3846g00012 269 MobiDBLite consensus disorder prediction 222 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3846g00012 Pral-Chr3846 130978 132979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3846g00012 1 269 MYB Transcription Factor Family AT1G17950 50.177 4.04e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3846g00012 Myb_DNA-bind_6 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3846g00012 K09422 - qsa:O6P43_005257 330.102