Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3845g00003 ATGGAAGGAGAAGGAGATCACAGTCACTCATCTAATTCTATCTACAGAGAGTGTCTTCGAAACCATGCAGCCAGCCTCGGCAGCTACGCCACCGACGGCTGCGGCGAGTTCACCCTCGACGACACATCTCCGGGAGGGTGTCTGCAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCAAGGTGACGTTCCCACCACCTCCGAGGGGGTTCAGCCGGCCGGAGCTGACGGGGGAGCTGATGGAGTACAGCGGCGGGGAGGCGACGCCGCCGAGCAGCGGGATGATGGAGGCGGGGGAGAGAACGACGTCGGGAACTGGGAACAAGAAGAGGTTCAGGACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGATGGGATTTGCAGAGAAGCTGGGGTGGAAGTTGCAGAGGAAGGATCTAGACGATGAGATCGAGAGGTTCTGCAGAGGAGTGGGAGTGAGCCGGCAAGTTTTCAAGGTTTGGATGCATAACCATAAGAACTCTTCTTCATCTTCTTCTGCTAATTCTACCGGCAATGCCTCCTCTCTTACCCAGTAA 561 0.5758 MEGEGDHSHSSNSIYRECLRNHAASLGSYATDGCGEFTLDDTSPGGCLQCAACGCHRNFHRKVTFPPPPRGFSRPELTGELMEYSGGEATPPSSGMMEAGERTTSGTGNKKRFRTKFTAEQKEKMMGFAEKLGWKLQRKDLDDEIERFCRGVGVSRQVFKVWMHNHKNSSSSSSANSTGNASSLTQ 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3845g00003 186 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 169 - -
Pral3845g00003 186 Gene3D - 95 174 - -
Pral3845g00003 186 NCBIfam homeobox domain, ZF-HD class 110 168 IPR006455 -
Pral3845g00003 186 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 15 63 IPR006456 -
Pral3845g00003 186 MobiDBLite consensus disorder prediction 167 186 - -
Pral3845g00003 186 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 15 62 IPR006456 -
Pral3845g00003 186 SUPERFAMILY Homeodomain-like 103 168 IPR009057 -
Pral3845g00003 186 FunFam Zinc-finger homeodomain protein 2 97 172 - -
Pral3845g00003 186 MobiDBLite consensus disorder prediction 87 109 - -
Pral3845g00003 186 Pfam ZF-HD protein dimerisation region 14 63 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3845g00003 Pral-Chr3845 22002 24839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3845g00003 15 169 ZF-HD Transcription Factor Family AT4G24660 47.429 4.65e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral3845g00003 ZF-HD_dimer 3.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3845g00003 - - jre:108993100 250.366