Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3842g00014 ATGGTTCTGGGATGGCGAAGAAGAAAGAACGGCCGTCGCAACGACAAACTTCAGCTCGAGGTCGTCGTTCCCAACCACTTCCGGTGCCCGATTTCCCTCGATTTGATGAAAGATCCTGTCACATTGTCCACCGGCGTCACCTACGATCGTGATAACATCGAAAGGTGGTTCCTTGAAGGCAATTTCACTTGCCCCGTTACCAACCAGGTCCTCAGGAGCTTCGATCTCATTCCCAATCACACTCTTCGCATAATGATTCAGGAATGGTGTGTTGAAAATCGACAACATGGGGTCGAGAGAATCCCTACTCCCAGAATTCCCATTTCCCCCGTCCAAGTCGAAGAGCTTCTTCTTCTTGTGAAATCGTCGGCGAGGCGTTTGGATCAGTACGGGTGTCTCAACTTGGTTCAGAAAATGGAGAAATGGGGTGAAGAGAGCGAAAGGAATAAGAAGTGTATAGTTGAGAATGGAGCCACTGCTGCTCTGGCCTCTGCTTTTGACGCGTTCGCGAATGATTCGATTGAGAAGAATCTGAGTGTTTTGGAAGAGATTTTGTCTGCTCTGAATTGGATGTTCCCACTTCAAATGGAAGCCCAGAAATCGTTGGGGTCACAAGCTTCGTTAGGTTGCATGGTGTGGTTTCTGAAACATCAAGATCTGGCAGGGAAAGAGAAGTCCATTGTTGCTCTCAGGGAGCTTCTCTCTTTTGGAAACGAAGACCATTTGAACGTTCTGGCAGAAATTGAAGGAGTCAACGAACTATTGGTGGAATTCATTACAAAAAGACTGAGTCCAACAATCACAAAAGCTTCATTAGCTGTAGTTTTCTATATGGTCTCATCATCCTCTTCCTCAAGCAACAAAATGAAACAGAGATTCATCCAACTGGGTTTGGTCTCTTCTTTGCTGGACATTCTCCTGGACTCAGAAAGAAGCCTCTGTGAGAAGGCTTTGGCAATTTTCGATTCACTCTGCTCTTGCGAGGAAGGCAGAGAAAAAGCTTACAATAACGCCTTGACGATCCCTGTGTTGGTGAAGAAGATACTGAGAGTTTCAGCAATGGCTACAGATTCCTCTGTTTCTGCAATATGGAAGCTGTGCAAGAATGGAGCAGAGAAAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGCGTTCCGATTGAAGCACTGCAAGTTGGTGCGTTTCAGAAGCTTTTGTTAGTTTTGCAGATTGGATGTGGCGATGAAACGAAGGTGAAAGCAACTGAGCTTCTCAAACTCCTGAATCAATATGGCTCAGGCGTGGATTGTGTAGACTCAGATTTCAAGAACCTAAAGAGATCACATTAG 1326 0.4548 MVLGWRRRKNGRRNDKLQLEVVVPNHFRCPISLDLMKDPVTLSTGVTYDRDNIERWFLEGNFTCPVTNQVLRSFDLIPNHTLRIMIQEWCVENRQHGVERIPTPRIPISPVQVEELLLLVKSSARRLDQYGCLNLVQKMEKWGEESERNKKCIVENGATAALASAFDAFANDSIEKNLSVLEEILSALNWMFPLQMEAQKSLGSQASLGCMVWFLKHQDLAGKEKSIVALRELLSFGNEDHLNVLAEIEGVNELLVEFITKRLSPTITKASLAVVFYMVSSSSSSSNKMKQRFIQLGLVSSLLDILLDSERSLCEKALAIFDSLCSCEEGREKAYNNALTIPVLVKKILRVSAMATDSSVSAIWKLCKNGAEKEEEEEEEGKSVPIEALQVGAFQKLLLVLQIGCGDETKVKATELLKLLNQYGSGVDCVDSDFKNLKRSH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3842g00014 441 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Pral3842g00014 441 CDD RING-Ubox_PUB 24 76 IPR045210 -
Pral3842g00014 441 Gene3D - 116 426 IPR011989 -
Pral3842g00014 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Pral3842g00014 441 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Pral3842g00014 441 SUPERFAMILY RING/U-box 20 99 - -
Pral3842g00014 441 SUPERFAMILY ARM repeat 144 418 IPR016024 -
Pral3842g00014 441 PANTHER WDSAM1 PROTEIN 20 426 IPR045185 GO:0061630
Pral3842g00014 441 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Pral3842g00014 441 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3842g00014 Pral-Chr3842 97583 98987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3842g00014 5 439 U-box Gene Family AT5G37490 44.295 1.52e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3842g00014 - - gmx:100817623 631.328