Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3842g00009 | ATGAGCTTGCACGTCCGCCAAGAAAGAAGGGATCGGTCCAAGATTCCTGCCCAAGGTTCTCGTCAGGAATGGGTTCCTAGAGCATCTGCAGCCGCTGCCACGTTGAATTCGATACCATCAAATTATCCATTGGATCAAAATGGTATTGCTGGTTGCTCAAATAATAATGTTGCTCCACCAGCAAATCAGCACAGAAGCAATCATGGGTCAAGTGGTCACATAAATCGGCCTATTAATCATAGAAGGGAGAGGGAAAAGGGAAGGAATGACAATCAACTGGTACACGGAGTGAGGGACTCTAATTTGCCTCAACTGTTGCAAGAGATCCAGGATAAGCTTATGAAAAGTACTGTAGAATGCATGATTTGCTACGACATGGTCCGTAGATCTGCACCCATCTGGTCTTGCCCAAGCTGCTACTCAATCTTTCACCTGAATTGTATAAAGAAGTGGGCTCGAGCACCTACTTCTGTTGATGTCTCTGCAGAAAAGAATCAAGGGTTTAATTGGCGGTGTCCTGGTTGTCAATCTGTACAGCTGACGTCATCAAGGGAGATTAGGTATGTATGCTTTTGTGGAAAGAGGCCCGACCCACCATCTGATCCGTATCTCACACCACATTCTTGTGGAGAACCATGTGGGAAGCCTCTTGAAAGGGAGGTGTTGGTTAATGGAGGGAGAGGGAGCAAGGAAGATCTTTGCCCTCATGTTTGTGTTCTGCAATGCCATCCAGGTCCATGCCCTCCATGTAAAGCATTTGCACCACCGCGTTTGTGTCCTTGTGGGAAGAAAACTATTACCACACGGTGCTCTGATCGCTCCTCTGTTCTTACCTGTGGTCAACGTTGTGATAAGCTTCTTGAGTGTGGGCGTCATAGGTGTAAACACATTTGCCATGTGGGTCCTTGTGACCCGTGTCAAGTTCTAATCAACGCCTCTTGTTTCTGCAACGGGAAGGCAGAGGTTATTCTTTGTGGGGACATGGCCGTGAAGGGTGAAATTAAAGTTGAAGGTGGTGTATTTTCTTGTGGTTCTAATTGTGGGAAGAAGCTTAGTTGTGGTAATCATGTCTGCAATGAGATTTGTCATCCAGGCAGCTGTGGGGAGTGTGAATTCTTACCAAGCCAGATTAAGACATGCTGTTGTGGGAAAACAAAACTGGAGGAGGAACGACAGAGCTGTCTAGATCCAATACCAACCTGTTCACAATTATGTGACAAGCCTCTTCCTTGTGGGTTGCATCATTGTAGAGAGGCATGTCATTTGGGGGATTGTCCACCATGTTTGGTTCTAGTATCCCAAAAGTGTCGGTGTTGTTCAACTTCTCGAACTGTGGAGTGCTACAAGGCAATGAAGGAGAATGAGTCGTTTACTTGTGAAAGATCTTGTGGGCGGAAAAAAAACTGTGGAAGGCATCGATGTAGTGAACGTTGTTGTCCACTTTCTAATCCAAATAATCGTCTAAATGGGGAGTGGGATCCTCACTTTTGTACCATGCCATGTGGAAAGAAGCTAAGGTGCGGGCAACATGCATGTGAATCACTGTGTCATAGTGGCCATTGTCCACCTTGTCTTGAAACTATCTTCACTGATTTGACATGTGCTTGTGGTAGGACCTCAATCCCTCCTCCATTGCCTTGTGGTACACCCCCTCCCTCGTGTCAACTTCCATGTTCAGTTCCTCAACCTTGTGGCCATTCAGCCTCCCACAGCTGCCACTTTGGAGATTGCCCACCTTGTTCGGTGCCTGTGGCAAAAGAATGTATTGGTGGGCATGTGGTTCTTAGGAATATACCTTGTGGGTCAAAGGATATTAGATGTAATAAACTGTGTGGGAAGACCAGACGGTGTGGGTTACATGCTTGTGGCAGAACATGTCACCCTCCACCTTGTGATGGTCCATCTGGTTGTGACCAAGGTCTCCGAGCTTCTTGTGGTCAAACATGTGGTGCTCCAAGGAGAGACTGCAGGCATACATGTACAGCTGCGTGTCACCCTTCGGCACCATGCCCTGATATAAGATGTGAGTTTTCTGTTACAATTACTTGTTCTTGTGGCCGTATAACGGCAAATGTTCCTTGTGGTGCTGGTAGTGGTAGTGGTAATTATAATGTGGATTCCATACATGAAGCTTCCATAATTCAAAAGTTGCCTGTTCCACTTCAACCAGTGGAAAACAGCAAATTGATTCCCCTTGGACAAAGAAAGCTGGCATGTGATGATGAATGTGCTAAGTTGGAGCGTAAAAAGGTTCTTGCTGATGCTTTTGATGTCACCCCTCCAAACTTGGATTCTCTTCATTTTGGTGAGAACTCCACTACTGCTGAATTGCTCTCAGACATGCTCAGGCGTGATCCTAAGTGGGTTTTGTCTGTGGAGGAGAGATGCAAATTTTTAGTTCTTGGCAAGAGCAGAGGAGTAACCCATGGTTTGAAAGTCCATGTTTTCTGTCCTATGCTGAAGGATAAGAGAGATGCAGTGAGGGTTATTGCTGATAGATGGAAGTTGGCGGTGAGTGCTGCTGGTTGGGAGCCAAAGCGATTTGTCATAATTCATGTGACCCAGAAGTCAAAGGCTCCTCCCCGGGTGCTTGGGGTTAAGGGTACTACAACGGTAAATGCAACTTTCCCTCCACAATTCGATCCCTTAGTAGACATGGATCCCCGTCTTGTTGTCTCCTTTCCGGACTTACCAAGAGAAGCCGATATAAGTGCTTTAGTCTTGAGGTTTGGCGGTGAATGTGAACTTGTTTGGTTGAATGATAAAAATGCATTGGCTGTTTTCCATGATCCTAGCCGAGCTGCGACTGCAATGAGGAGGTTGGATCATGCAACAACTTATCATGGCGCTGTGGTGGTTGTACCAACTGCTGGGGCATCAGCAACATCGGCAGCAACTAATGCATGGGGAGGAGCTGGAACGCTGAAAGAAGGAGGAGCGCTGGCAGCATTGAAGGGGAATTCATGGAAAAAGGCTGTGGTTCAAGAGCCTGGCTGGAGAGAAGATTCTTGGGGTGATGAAGAGTGGACTACTGGTTCTGCTAATCTCCAGCCTTCTGCCTGGACGAGAGAAACACCTAAAGCCCCAATCACTGCTTCATTGAATCGGTGGAGTGTCTTAGACCAAGAATCATCTTCGAATTCAGCTGCTGAGTCCATTAGAACTGAAGTTTCTCGGAAACAATCAGCAAGTTCATCTTCTGGCCCAAAGCTGGAATCTGAATCCGGTGGTTCTGTTCCACGACAGCATCAAGGAAATGATAATGCAACAGAAGTTTCTGAAGTAGTAGATGATTGGGAGAAAGCTTATGAATGA | 3315 | 0.4652 | MSLHVRQERRDRSKIPAQGSRQEWVPRASAAAATLNSIPSNYPLDQNGIAGCSNNNVAPPANQHRSNHGSSGHINRPINHRREREKGRNDNQLVHGVRDSNLPQLLQEIQDKLMKSTVECMICYDMVRRSAPIWSCPSCYSIFHLNCIKKWARAPTSVDVSAEKNQGFNWRCPGCQSVQLTSSREIRYVCFCGKRPDPPSDPYLTPHSCGEPCGKPLEREVLVNGGRGSKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRSSVLTCGQRCDKLLECGRHRCKHICHVGPCDPCQVLINASCFCNGKAEVILCGDMAVKGEIKVEGGVFSCGSNCGKKLSCGNHVCNEICHPGSCGECEFLPSQIKTCCCGKTKLEEERQSCLDPIPTCSQLCDKPLPCGLHHCREACHLGDCPPCLVLVSQKCRCCSTSRTVECYKAMKENESFTCERSCGRKKNCGRHRCSERCCPLSNPNNRLNGEWDPHFCTMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRRCGLHACGRTCHPPPCDGPSGCDQGLRASCGQTCGAPRRDCRHTCTAACHPSAPCPDIRCEFSVTITCSCGRITANVPCGAGSGSGNYNVDSIHEASIIQKLPVPLQPVENSKLIPLGQRKLACDDECAKLERKKVLADAFDVTPPNLDSLHFGENSTTAELLSDMLRRDPKWVLSVEERCKFLVLGKSRGVTHGLKVHVFCPMLKDKRDAVRVIADRWKLAVSAAGWEPKRFVIIHVTQKSKAPPRVLGVKGTTTVNATFPPQFDPLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPSRAATAMRRLDHATTYHGAVVVVPTAGASATSAATNAWGGAGTLKEGGALAALKGNSWKKAVVQEPGWREDSWGDEEWTTGSANLQPSAWTRETPKAPITASLNRWSVLDQESSSNSAAESIRTEVSRKQSASSSSGPKLESESGGSVPRQHQGNDNATEVSEVVDDWEKAYE | 1104 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3842g00009 | 1104 | CDD | NF-X1-zinc-finger | 343 | 388 | - | - | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 53 | 74 | - | - | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 617 | 632 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 236 | 251 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 564 | 581 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 411 | 428 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 507 | 524 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 289 | 307 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 649 | 674 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 353 | 370 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | Pfam | NF-X1 type zinc finger | 469 | 480 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Pral3842g00009 | 1104 | CDD | NF-X1-zinc-finger | 497 | 540 | - | - | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 411 | 430 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 564 | 582 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 507 | 526 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 289 | 308 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 353 | 372 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 617 | 639 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 469 | 499 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 234 | 252 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | SMART | znfxneu3 | 656 | 677 | IPR000967 | GO:0005634|GO:0008270 | |
| Pral3842g00009 | 1104 | ProSiteProfiles | Zinc finger PHD-type profile. | 117 | 178 | IPR019787 | - | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 995 | 1027 | - | - | |
| Pral3842g00009 | 1104 | CDD | NF-X1-zinc-finger | 279 | 327 | - | - | |
| Pral3842g00009 | 1104 | CDD | NF-X1-zinc-finger | 554 | 602 | - | - | |
| Pral3842g00009 | 1104 | CDD | NF-X1-zinc-finger | 645 | 696 | - | - | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 76 | 93 | - | - | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 1041 | 1104 | - | - | |
| Pral3842g00009 | 1104 | CDD | NF-X1-zinc-finger | 209 | 272 | - | - | |
| Pral3842g00009 | 1104 | Gene3D | - | 885 | 949 | IPR012677 | - | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 1008 | 1027 | - | - | |
| Pral3842g00009 | 1104 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 | 66 | 1007 | IPR034078 | GO:0003700 | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Pral3842g00009 | 1104 | SUPERFAMILY | RING/U-box | 110 | 179 | - | - | |
| Pral3842g00009 | 1104 | CDD | RING-CH-C4HC3_NFX1-like | 119 | 176 | - | - | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 1041 | 1091 | - | - | |
| Pral3842g00009 | 1104 | CDD | NF-X1-zinc-finger | 401 | 449 | - | - | |
| Pral3842g00009 | 1104 | MobiDBLite | consensus disorder prediction | 53 | 97 | - | - | |
| Pral3842g00009 | 1104 | ProSiteProfiles | Zinc finger RING-type profile. | 120 | 176 | IPR001841 | - |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | NF-X1 | Pral3842g00009 | zf-NF-X1 | 24 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3842g00009 | K12236 | - | qsa:O6P43_005222 | 1798.1 |