Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3840g00013 ATGCATTCAATCCACAGTGCTTCTTGCTATGCTAACCTCAACCACTCTCTATCCCAGTTCAATCCAGTTTCCAACTGTTTGGTTGGATCCAATGTGCTACTGGCCTCCTGCGCACCACCGGCTGTTCCTAGCTTCAGATTGCGTGCTATTCATTCTGAATTCTTGCCCAGAATTAGTTATTTTCCGAACCCAAGTTTTGTTTTCGCACGCAGGAAACCCTGGCGCTGTGTAGTAGCCAGGGCCACCGGAACTGACTACTATTCGACTTTGAAAGTTAGTAAAAATGCTTCTTTGCAAGAGATTAAGAGCTCTTACAGAAAACTAGCCCGTAAGTATCATCCAGATATGAACAAGAGCCCGGGGGCAGAAGAGAAATTCAAGGAGATAAGTGCTGCATATGAGGTTCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGGCAGGTCTACAAGGAGAAAATGGAGGGTCAGCTGGTACTTCAGGGGTTGATCCTTTTGATGTATTTGATGCATTCTTTGGTGGTTCGGACGGTCTATTTGGAGGTGGTGATGAACTAGGAGGAATGAACTTCAATTTGAGAAACAACAGAAAAAGGGGTCTTGATATTCGGTATGACCTTCACTTGAGCTTTGAGGAATCTATTTTTGGAGGAAGGAGAGAAATCGAAGTTCCTTGTTTTCAGACATGTAATGATTGTGATGGTACAGGAGCTAAATCAAAGGATTGCATTAAGCCATGCATAAATTGTGGTGGCAGAGGAGGAGAGATGAAAAGTCAAAGAACCCCCTTTGGAGTAATTTCTCAGGTTTCAACCTGCTCTAAGTGCCGTGGTCTTGGCAGGATAGTCACTGATAACTGTCAAAGGTGTAGTGGCAGTGGCATGGTGCAGTCTAAACAAACAATGGAAATGGTCATTCCTCCTGGTGTCAATGACGGAGCCACAATGCAAATTCGAGGCGAAGGGAATTTTGATAAGAATAGGGGTACAGCTGGTGACCTTTACATAGTCATCCATGTAGATGAAAAAGATGGAGTTTGGAGGGAAGGTCTTCACTTGTACTCAAAGATTAATATTGACTTCACAGAGGCAATTCTAGGGTCTGTTAAAAAGGTAGAAACTGTTGAGGGTTTAAGGGATCTCCGAGTACCTTCTGGCATTCAACCAGGAGATTCCGTCAAGTTATCACGTATGGGAGTTCCTGACATGAACAAACCATCTGTTCGGGGCGATCATTACTTCATTGTGAATGTCCTCATCCCTAAAAGTATCAGTGTTGCTGAACGTGTACTTGTTGAGGAATTGGCTTCACTCAGATCATCTGGCGAAGATACCCCAATTTCTTCTAATAACATTGGGACACCTAATGGGGGAGTAAATGATTTCAAAAAGAGGCACCCAAAACGCCATTCAAGCATGGGAAGCAAGCAAGGTTCTCTATGGAGATCAATCAGGAATTTCTTAAGGGGAGGGCAATCTCAAGAGAAGTTTGCATCTATTAGCTTGGATTCCTCAGCAGCGTCGTGGAGATTTGACAAGTCGAACTCATCTAACCCTAATTATTTTGTATTTGGTTTCGTTATGAGTTGTATTATTTTCTATATATCTAGGTCTTATTTCGCTTTGTTTAATAAACGGACCCTTCCCTCTACCCATAGAACACCTAGTGAAAGGACATTAAAAGGAAGAGATTTTTCTGTTTGA 1713 0.425 MHSIHSASCYANLNHSLSQFNPVSNCLVGSNVLLASCAPPAVPSFRLRAIHSEFLPRISYFPNPSFVFARRKPWRCVVARATGTDYYSTLKVSKNASLQEIKSSYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLQGENGGSAGTSGVDPFDVFDAFFGGSDGLFGGGDELGGMNFNLRNNRKRGLDIRYDLHLSFEESIFGGRREIEVPCFQTCNDCDGTGAKSKDCIKPCINCGGRGGEMKSQRTPFGVISQVSTCSKCRGLGRIVTDNCQRCSGSGMVQSKQTMEMVIPPGVNDGATMQIRGEGNFDKNRGTAGDLYIVIHVDEKDGVWREGLHLYSKINIDFTEAILGSVKKVETVEGLRDLRVPSGIQPGDSVKLSRMGVPDMNKPSVRGDHYFIVNVLIPKSISVAERVLVEELASLRSSGEDTPISSNNIGTPNGGVNDFKKRHPKRHSSMGSKQGSLWRSIRNFLRGGQSQEKFASISLDSSAASWRFDKSNSSNPNYFVFGFVMSCIIFYISRSYFALFNKRTLPSTHRTPSERTLKGRDFSV 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3840g00013 570 SUPERFAMILY Chaperone J-domain 80 191 IPR036869 -
Pral3840g00013 570 Gene3D - 203 339 - -
Pral3840g00013 570 MobiDBLite consensus disorder prediction 446 479 - -
Pral3840g00013 570 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 49 445 - -
Pral3840g00013 570 Pfam DnaJ domain 85 146 IPR001623 -
Pral3840g00013 570 ProSitePatterns Nt-dnaJ domain signature. 126 145 IPR018253 -
Pral3840g00013 570 FunFam Chaperone protein dnaJ A6 chloroplastic 82 188 - -
Pral3840g00013 570 MobiDBLite consensus disorder prediction 446 460 - -
Pral3840g00013 570 CDD DnaJ 85 138 IPR001623 -
Pral3840g00013 570 ProSiteProfiles Zinc finger CR-type profile. 220 302 IPR001305 GO:0031072|GO:0051082
Pral3840g00013 570 SUPERFAMILY HSP40/DnaJ peptide-binding domain 351 432 IPR008971 GO:0006457|GO:0051082
Pral3840g00013 570 SMART dnaj_3 84 141 IPR001623 -
Pral3840g00013 570 Hamap Chaperone protein DnaJ [dnaJ]. 82 490 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pral3840g00013 570 Gene3D - 233 297 - -
Pral3840g00013 570 Gene3D - 350 441 - -
Pral3840g00013 570 PRINTS DnaJ domain signature 87 105 IPR001623 -
Pral3840g00013 570 PRINTS DnaJ domain signature 105 120 IPR001623 -
Pral3840g00013 570 PRINTS DnaJ domain signature 141 160 IPR001623 -
Pral3840g00013 570 PRINTS DnaJ domain signature 121 141 IPR001623 -
Pral3840g00013 570 Gene3D DnaJ domain 82 184 IPR036869 -
Pral3840g00013 570 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 220 300 IPR036410 -
Pral3840g00013 570 Pfam DnaJ C terminal domain 206 424 IPR002939 -
Pral3840g00013 570 FunFam Molecular chaperone DnaJ 225 302 - -
Pral3840g00013 570 CDD DnaJ_zf 233 297 IPR001305 GO:0031072|GO:0051082
Pral3840g00013 570 CDD DnaJ_C 205 427 - -
Pral3840g00013 570 Pfam DnaJ central domain 233 297 IPR001305 GO:0031072|GO:0051082
Pral3840g00013 570 ProSiteProfiles dnaJ domain profile. 85 149 IPR001623 -
Pral3840g00013 570 SUPERFAMILY HSP40/DnaJ peptide-binding domain 200 357 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3840g00013 Pral-Chr3840 143189 156139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3840g00013 86 146 C2H2 Transcription Factor Family AT1G74250 46.269 4.53e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3840g00013 K03686 - gmx:100782135 670.233