Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3840g00010 ATGGAACGGGATTTTCTGGGTTTGAGTTCAAAGGTTAGTTCAGCAACTAAGAAAGAGGATACTACTGGTAAAGCGAACGAGCCAGTGAGGGGTTTAGGAATGCAGTGGTCGTTTTCAAACAAGGTTTCTGCTGTTCCTCAATTGTTGTCCTTTAAGACTTCTCCGGAAGATAGGACAAGAAAGACCACATCATCAGCTGATGCTTTTGACTCTAACCAGAAACCATTCATGGGTGGGATCCAGAAAAGTTTGAGCATGGGAAAACAAGTAGGAAATGAACGTGGAATGACAGTATACCCTATGCAACAAGTTGATACACTTTCAGGCTACCATCAAGAAGCCAGAACATTTTCAGTCTCCAACCAATCAAATCAGAGGAGTCCTGTTCTCCAATGTACTGTCAGTACCAATGTTCAGAACATGGTCAATTCTGCCATAAAACCACACCCTCAAGGAGGAGTCCCTCTGATTGCCCCTGTATCTGTTCTTCCATCAAACGGTTACGCTGTTGGTACCACTGACTTAGGGAACTCGTCGCAACCCTCTGGCAAACCTACTCAGCTGACCATATTCTATGCTGGTTCAGTGTGTGTTTATGAAGACATAGCTCCCGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGACATGGGAGTACTCCAAATCAAAACAAATCAGTGTCAACAGCTCCAGTGCAGACACCAAACTACAAGACTTCTAAAGATGATGGGTTTATTGTAAGCCAATCCTACCATTCACCTTTACCAAGTCCGATTCCCATGTCCTTCCATGTTAGTTCTCAGCCTGTGGGAGGACCTCCTAGCACCAATGAACCAGCAATTGTGAGACCAGTATCATCTTCGGCTGCCCCAAGTTGCAATCTGGAGTCTCCTAGTGTAGCTAGCTCTTCAAAATCTGCAGCGACAAAAGTTGGTTCACCTGTGGACTTGCCTCAGGCGCGCAAAGCATCCTTGGCTCGGTTCTTAGAGAAGCGCAAGGAAAGGGTGACAAGCACATCACCATACCACACAAACAAGAAATCACCAGAATGTGGCAATCAAGGAACGGATAGTATTAGTTTCTCCATCACATCCACCGGTTCTTGTCCCCTACCTGCCATGAACTAG 1125 0.4596 MERDFLGLSSKVSSATKKEDTTGKANEPVRGLGMQWSFSNKVSAVPQLLSFKTSPEDRTRKTTSSADAFDSNQKPFMGGIQKSLSMGKQVGNERGMTVYPMQQVDTLSGYHQEARTFSVSNQSNQRSPVLQCTVSTNVQNMVNSAIKPHPQGGVPLIAPVSVLPSNGYAVGTTDLGNSSQPSGKPTQLTIFYAGSVCVYEDIAPEKAQAIMLLAGHGSTPNQNKSVSTAPVQTPNYKTSKDDGFIVSQSYHSPLPSPIPMSFHVSSQPVGGPPSTNEPAIVRPVSSSAAPSCNLESPSVASSSKSAATKVGSPVDLPQARKASLARFLEKRKERVTSTSPYHTNKKSPECGNQGTDSISFSITSTGSCPLPAMN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3840g00010 374 SMART tify_2 181 216 IPR010399 -
Pral3840g00010 374 MobiDBLite consensus disorder prediction 218 314 - -
Pral3840g00010 374 MobiDBLite consensus disorder prediction 340 374 - -
Pral3840g00010 374 Pfam Jas motif 317 341 IPR018467 -
Pral3840g00010 374 MobiDBLite consensus disorder prediction 53 78 - -
Pral3840g00010 374 MobiDBLite consensus disorder prediction 1 32 - -
Pral3840g00010 374 MobiDBLite consensus disorder prediction 331 374 - -
Pral3840g00010 374 ProSiteProfiles Tify domain profile. 181 216 IPR010399 -
Pral3840g00010 374 MobiDBLite consensus disorder prediction 218 309 - -
Pral3840g00010 374 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 114 351 IPR040390 -
Pral3840g00010 374 Pfam tify domain 184 215 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3840g00010 Pral-Chr3840 81645 85465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3840g00010 34 347 Tify Gene Family AT3G17860 39.233 3.96e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pral3840g00010 tify 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3840g00010 K13464 - gmx:100807288 373.629