Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3840g00009 ATGGAACGGGATTTTCTGGGTTTGAGTTCAAAGGTTAGTTCAGCAACTAAGAAAGAGGATACTACTGTGAGGGGTTTAGGAATGCAGTGGTCGTTTTCAAACAAGGTTTCTGCTGTTCCTCAATTGTTGTCCTTTAAGACTTCTCCGGAAGATAGGACAAGAAAGACCACATCATCAGCTGATGCTTTTGACTCTAACCAGAAACCATTCATGGGTGGGATCCAGAAAAGTTTGAGCATGGGAAAACAAGTAGGAAATGAACGTGGAATGACAGTATACCCTATGCAACAAGTTGATACACTTTCAGGCTACCATCAAGAAGCCAGAACATTTTCAGTCTCCAACCAATCAAATCAGAGGAGTCCTGTTCTCCAATGTACTGTCAGTACCAATGTTCAGAACATGGTCAATTCTGCCATAAAACCACACCCTCAAGGAGGAGTCCCTCTGATTGCCCCTGTATCTGTTCTTCCATCAAACGGTTACGCTGTTGGTACCACTGACTTAGGGAACTCGTCGCAACCCTCTGGCAAACCTACTCAGCTGACCATATTCTATGCTGGTTCAGTGTGTGTTTATGAAGACATAGCTCCCGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGACATGGGAGTACTCCAAATCAAAACAAATCAGTGTCAACAGCTCCAGTGCAGACACCAAACTACAAGACTTCTAAAGATGATGGGTTTATTGTAAGCCAATCCTACCATTCACCTTTACCAAGTCCGATTCCCATGTCCTTCCATGTTAGTTCTCAGCCTGTGGGAGGACCTCCTAGCACCAATGAACCAGCAATTGTGAGACCAGTATCATCTTCGGCTGCCCCAAGTTGCAATCTGGAGTCTCCTAGTGTAGCTAGCTCTTCAAAATCTGCAGCGACAAAAGTTGGTTCACCTGTGGACTTGCCTCAGGCGCGCAAAGCATCCTTGGCTCGGTTCTTAGAGAAGCGCAAGGAAAGGGTGACAAGCACATCACCATACCACACAAACAAGAAATCACCAGAATGTGGCAATCAAGGAACGGATAGTATTAGTTTCTCCATCACATCCACCGGTTCTTGTCCCCTACCTGCCATGAACTAG 1107 0.458 MERDFLGLSSKVSSATKKEDTTVRGLGMQWSFSNKVSAVPQLLSFKTSPEDRTRKTTSSADAFDSNQKPFMGGIQKSLSMGKQVGNERGMTVYPMQQVDTLSGYHQEARTFSVSNQSNQRSPVLQCTVSTNVQNMVNSAIKPHPQGGVPLIAPVSVLPSNGYAVGTTDLGNSSQPSGKPTQLTIFYAGSVCVYEDIAPEKAQAIMLLAGHGSTPNQNKSVSTAPVQTPNYKTSKDDGFIVSQSYHSPLPSPIPMSFHVSSQPVGGPPSTNEPAIVRPVSSSAAPSCNLESPSVASSSKSAATKVGSPVDLPQARKASLARFLEKRKERVTSTSPYHTNKKSPECGNQGTDSISFSITSTGSCPLPAMN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3840g00009 368 MobiDBLite consensus disorder prediction 1 21 - -
Pral3840g00009 368 SMART tify_2 175 210 IPR010399 -
Pral3840g00009 368 MobiDBLite consensus disorder prediction 212 308 - -
Pral3840g00009 368 MobiDBLite consensus disorder prediction 47 68 - -
Pral3840g00009 368 Pfam Jas motif 311 335 IPR018467 -
Pral3840g00009 368 MobiDBLite consensus disorder prediction 334 368 - -
Pral3840g00009 368 Pfam tify domain 178 209 IPR010399 -
Pral3840g00009 368 MobiDBLite consensus disorder prediction 325 368 - -
Pral3840g00009 368 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 107 345 IPR040390 -
Pral3840g00009 368 ProSiteProfiles Tify domain profile. 175 210 IPR010399 -
Pral3840g00009 368 MobiDBLite consensus disorder prediction 212 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3840g00009 Pral-Chr3840 81645 85465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3840g00009 28 341 Tify Gene Family AT3G17860 39.233 3.48e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pral3840g00009 tify 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3840g00009 K13464 - gmx:100807288 364.385