Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3839g00062 ATGGACCCTTCCTCGATCCCTCCTGCTCCTCCGTCTACCTTTCCGGCTCCAATTTCTCTCTTCCCTGTCAACTATGGTGCTGTTCCTGCCTCCACCACCGCGACAACGACCACCGCTGCCGCCGTCGCCCCCGTCGCGAATTCGGCTCCGGCTGCCGCTTCTTCTGATGCCGTTTCCACCCAGCCTGCTGCTCCCACTGCGAACCACCCTCCTTATTCTGAGATGATTTATGCAGCAATTGAGGCGCTGAAGGAGAAAAATGGGTCTAGTAAGAGGGCTATTGCGAAATACATAGAGCACGCTTATCCTAACCTTCCACCGACTCACCCTGCTTTGTTGACCTACCACCTTCAGCGCTTAAAGAACAATGGACTCCTTGTTATGGTCAAAAAGTCTTATAAACTTCCTAGATCTGACGGTTCTCCGTCTACTGCGCAGAGAGGACGTGGCAGGCCGCCGAAGCTGAAGCCTCAGCCGCAGGCGCAACCTCCGGCTCAGCCTCAGGGTCAGCCTCAGGTTCAGGGTTCGGCTCAGCCAGAGCAGCAGCCGGAGTCCATGCCCAACGCGCCGCAAAATCTGCAGAATGCGGAGCCTGTTTGGGTTGCCCTAGGGCTTGCTGATGAGCCCACAGAAGTGAAGAAACGAGGCCGAGGCCGTCCTCCCAAGAGTGCCGTAGCAGAGGGGGTTGGCTTACCTGGAACGGCTTCTAGGAGAGGCCGTCCTCCGGGTACTGGGAGATCTAGGTTGGCAAAGAGGCCTGGGCGTCCTCCTAAGCCGAAATCTGTGATGGCAATCTCCAATGGGATGAAGCGTCGACCTGGCAGGCCGCCCAAAATTCAGTCTAAACCCACGATGATTCCCTTTGCCGCCCCGACCGCTGCTCCCCAAGGGCCTACTTCACTCACCGCTCAGGAAGGAGCTGTGACGGATGCTACCGCACCAATTCTTGCTCCTAGGCGTAGAGGTCGTCCGAAGAAGTATGGAGTGCAGGCTCCCGGAGTTGCTTCTGGAGCTATTGGCCGTGGTCGAGGCCGTGGAAGAGGACGTGGGCGTGGTGTCTTTCGCACCTCTACTGGAAGACCTGTTGGTCGGCCTAGGAAGGGAACAACTCCTGATGCTGCTGCACAAAAAGCTGCTAATGAAGAGTTCAAGAGGAAACTTGAATATTTTCAATCCAAAGTGAAGGAATCCCTTGCTGTGATTAAGCCTCATTTCAACCATGAAAGCCCAGTCACTGCAATTGCGGCAATCCAAGATTTAGAAATACTGGCAACCCTGGACATTAATGCACCGTTAAGTGATGATACACAGCCAGCACAGCAGCTTCATCAACTGCAAGTGCAGTCACAGCCGCCACCACAGCAATCAGAACAGCCGGAGTTTCCACCACAGCAAATGCCTCCACCGCAGATGTTTCAGCATCAGTTGCCACAGTCCCATGTTTTCCCTCAGTCATATCAGCAGCAACAGCTTTTCCAGCAGCAAATGCCACAGCCTCAGCTTTATCAACAGCAAATGCAGCATGTACCATTGCAGTCACAGCAGCCGCAATTGTTTCAACCACATGCATGA 1572 0.5458 MDPSSIPPAPPSTFPAPISLFPVNYGAVPASTTATTTTAAAVAPVANSAPAAASSDAVSTQPAAPTANHPPYSEMIYAAIEALKEKNGSSKRAIAKYIEHAYPNLPPTHPALLTYHLQRLKNNGLLVMVKKSYKLPRSDGSPSTAQRGRGRPPKLKPQPQAQPPAQPQGQPQVQGSAQPEQQPESMPNAPQNLQNAEPVWVALGLADEPTEVKKRGRGRPPKSAVAEGVGLPGTASRRGRPPGTGRSRLAKRPGRPPKPKSVMAISNGMKRRPGRPPKIQSKPTMIPFAAPTAAPQGPTSLTAQEGAVTDATAPILAPRRRGRPKKYGVQAPGVASGAIGRGRGRGRGRGRGVFRTSTGRPVGRPRKGTTPDAAAQKAANEEFKRKLEYFQSKVKESLAVIKPHFNHESPVTAIAAIQDLEILATLDINAPLSDDTQPAQQLHQLQVQSQPPPQQSEQPEFPPQQMPPPQMFQHQLPQSHVFPQSYQQQQLFQQQMPQPQLYQQQMQHVPLQSQQPQLFQPHA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3839g00062 523 CDD H15 66 145 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral3839g00062 523 Gene3D - 65 146 IPR036388 -
Pral3839g00062 523 MobiDBLite consensus disorder prediction 167 192 - -
Pral3839g00062 523 PANTHER HISTONE H1 49 280 - -
Pral3839g00062 523 MobiDBLite consensus disorder prediction 132 192 - -
Pral3839g00062 523 MobiDBLite consensus disorder prediction 434 523 - -
Pral3839g00062 523 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Pral3839g00062 523 SMART AT_hook_2 318 330 IPR017956 GO:0003677
Pral3839g00062 523 SMART AT_hook_2 359 371 IPR017956 GO:0003677
Pral3839g00062 523 SMART AT_hook_2 235 247 IPR017956 GO:0003677
Pral3839g00062 523 SMART AT_hook_2 214 226 IPR017956 GO:0003677
Pral3839g00062 523 SMART AT_hook_2 344 356 IPR017956 GO:0003677
Pral3839g00062 523 SMART AT_hook_2 270 282 IPR017956 GO:0003677
Pral3839g00062 523 MobiDBLite consensus disorder prediction 434 454 - -
Pral3839g00062 523 PRINTS AT-hook-like domain signature 212 223 IPR017956 GO:0003677
Pral3839g00062 523 PRINTS AT-hook-like domain signature 316 326 IPR017956 GO:0003677
Pral3839g00062 523 PRINTS AT-hook-like domain signature 146 156 IPR017956 GO:0003677
Pral3839g00062 523 SUPERFAMILY "Winged helix" DNA-binding domain 65 142 IPR036390 -
Pral3839g00062 523 FunFam Histone H1.2 65 145 - -
Pral3839g00062 523 MobiDBLite consensus disorder prediction 455 470 - -
Pral3839g00062 523 Pfam linker histone H1 and H5 family 69 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral3839g00062 523 MobiDBLite consensus disorder prediction 471 523 - -
Pral3839g00062 523 SMART h15plus2 66 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral3839g00062 523 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 68 137 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral3839g00062 523 MobiDBLite consensus disorder prediction 210 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3839g00062 Pral-Chr3839 721824 725980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3839g00062 75 150 Single Myb Histone (SMH) Gene Family AT1G49950 39.474 7.71e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3839g00062 - - pcin:129310438 675.241