Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3839g00054 ATGGCTCCTCGTGCCGACGAGTGCGACGAAGATGAGCTCTCCTCCAGCGAAGACGATGACAGCTTCAATGAGGACTTGGAAGCTCTCGCACGAGCCTGCAAGATCGCCGGCACCAACCCTGATGACCTTAAACCCACTTCTACCGACGGTCCCGACGATGAGAACGCAGACGCAGTGGTTCCGAAAGCTCCTGACCCGCTGTTGGGCCCGGGCGATGCTCTCGTTCCTGTGTCAGACTCGGACGACGAGCAGAGTGACCTTCAGTATCTTAAAAGAGTACAGGAGCGTTACCAGCCTTCATCTCTCAAGCCATTGAATGTTCTTCCAGCGTTTTCTCTGTCTGATGACGAGGAAGATGATGTGGAGTTACTCCAGGCTATTAGGAGACGCTTTGCCTCCTATGATAGAGGCCCTGATGAAGATAATGAGGATAAAATGGCTCAGGGAGCTCATACCTCCGGTCCAGGCTCTGAGGAGGAATATGATAACAGCGTGACATTTAAGGGATTAGAGCCCGGTGAATCATGCCCTGTTTCTCAGGATGCTATTAAGACCACCAGTTTATTGACTGGTGATGGTGAGAGACATCCTTTTAACATCAACGAGAGGTGTAAACCCGAGGCTTGCAAGTCATCCAAGTTATCGGACAAAGGATCAAACTTTCCTTTGTCTGCTCAGGTTCTTTTTGATGCAATAAAAAAGAATAGATCTTTCCAGAGGTTACTTCGAAGTAAGTTGATTCAGATGGAAGCAAAAATTCAAGAAAACAGACAGCTAAGGGAAAGAGTAAAACTTCTTAAAGAGTTTCAGGTTTCTTGCATAAGAAGAACAGGGCAAGCTATATCACTGAAAAAGGATCCCCGTGTCCTTTTAATATCAATAAGAAAGTCTCCTGCTGCAAGTAGCACGAAGATTAATGATAAAAAAATATCTCCAATGTGTTATGGCCCAGCTGAGAATGCTCATGTTGCTAAATATAGGATGGTGTTGGAACGATCTCCATTCTCATTGGATAGGAAAAAATGGTCTAATGTGGAGAGGGAGAATCTTGCTAAGGGAATAAAGCAACAATTTCAAGAAATGGTGCTTCAAATGTCAATGAATCAAGACAGTTCAGGGTGGTTGTGTGAATATGCGGATAACTTTGATACCATACTTGCATCTATTAAAGATCTTGAGATTACGCCTGAGAACATTAGAAAGTTTCTGCCTAAATTCAATTGGGATCAGTTGGCTTCCAAGTATGTTGTTGGTCGTACAGGTGCAGAATGTGAAGCAAGGTGGTTAAATTGTGAAGATCCCTTGATCAATCATAGCCCATGGACCTGTGAGGAGGACAAATGGCTGTTGCACATTATCCAAGAGATTGGCAATAGGAACTGGTTCAAAATTGCTGAATTTTTAACCACAAGTAGGACCCCATTTCAATGCTTGGCACGATACCAAAGGAGTTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCTACTTCGTTCTGCTGTCACAATTTTTGGTGCGAGCGATTGGCAGTCTGTAGCTTCCGTCTTAGAACGAAGGACTGGACCCCAATGCTCTAATAGATGGAAGAAGTCCCTCTGTCCTGATAGGAAAGGGAGCTTTACTGTAGAAGAAGATGAGCGCTTAACAGTGGCTGTCCATCTCTTTGGACGGAAATGGAATCAGATAGCTAAATTTGTTCCTGGCCGGACCCAAGCTCAATGTAGAGACAGATACGTCAATAGTTTGGATCCCTCTTTGAAATGGGGTGGATGGACTAAGGAAGAAGATTCAAGATTGAAAAAAGCAATTGCCAAACATGGATTCTGCTGGTCAAAGGTTGCTGCAGATGTGCCTCCAAGAACTGACAGTCAGTGCAGGAAGAGATGGCGGGTTCTATTTCCTGACCAAGTTCCTATGCTCCAAGCAGCTAGAAAGATGAAAAAATCCGCTCTTATCAGTAACTTTGTTGATCGAGAGTCTGAACGGCCTTGTCTTTCTCTAAATGATTTTCTTCCCTTGGCAACGTTAGATCCGCCATCTGATCCAGATGTTGTGAACCTCCGACAGAAGCGGAAGAATAAGTCAAGCACTTCTAAGAAAAAGAGGCCCCAAAAACGTACAAAGAAGGCTCAAAGTTGTCTCAAGAAGCCACAGACGGACAAGGTTGAACCTTGTAATGGACATGGTCCTGAACCACATTTGGAGGACAACTCTGTTGATGCAATGCATGATCATTCTCCGCTGGACTCGGTTGTGACGACAACGAATGACCAAGGAGATTTTGGTGGACATAATAATATCGATAACCTAACTGAGTCAAATCAAGTTTGGACGGGGTTTAATGAATTGCATGAAGAGAGCCATACTTGTATAACACCTTGCGAGAATCCAGAAGGGACAATGGATCGGCATTGTGAGAATATGAACTCATTAAAACACCATACTGGAAGAAAGTCAAAGCTATCTGCAAGTATATCTGATGGTGCAGCGGTAGGTAGCAAGGTTGCTAGAAATACTACCTCAAAGAAGGAAAGGAAGGAGAAAAAGAAATGCGACAGAATGGTTAAAAGTGTTCAAACAGCAGAAAACCACCTGGTTAAGAATCAAATGCCAAAACCTGGAAGCCTATCTTCCATGCAGATCTTAGAAAGTCAGGATGAAGACAATATAACACTTGCTAGATATCTACACAATCCATCAAACAAACGGTTTAAAAATACCGATCAAATGACTCAGGCTGCCTCGTATGCTAGTTGTTCCATGAAAAAACCACGGAGATCTTGTCGAGCTGCCAAACAAACACGTGATTGCCAGCCTTTTAGTTTTAAAAAGGGATATGAATTGCCTTCTGAAGAAGTACACAACGGTCATGACAGAAACCAAGAAATGTTGGTTGTGCAAGGCGAGTTAGATGAAGATTGTATTGATGTTACACCTGGGACTTTGTCGGTCCAGAATCATTCTTGCAATTTGAAGAACATGTCAGCCATCAAAGCTGATGAAAATCAGAAGACGATGCCGGGGTCAGTTGATGAGCAGACTTTGTTTTTGGATGGGGTGACGGCACCCCAAAACATCAGTGTTGGAGAGGATGTGCCTACCGACGTTACCCTTGCTTCCTTCCTGAAAAAGATGAAAAGTAAGGGCAAGGCAACGACAGAGCCAGTTGATGAGCAGGCTATAGTTTTGAATGGTTTGACAGAAATCAAAAGCATGAGTGTTAGAAATGATGGGTCTCTTGACGTTACTCTGGCTTCCTTGCTGAAAAAGAGAGGAAGGAGACAGGGTAGAGCAGCTAAATGTGCCAGTCGTCCTTCTCATGATAGGGCTAAATGA 3351 0.4378 MAPRADECDEDELSSSEDDDSFNEDLEALARACKIAGTNPDDLKPTSTDGPDDENADAVVPKAPDPLLGPGDALVPVSDSDDEQSDLQYLKRVQERYQPSSLKPLNVLPAFSLSDDEEDDVELLQAIRRRFASYDRGPDEDNEDKMAQGAHTSGPGSEEEYDNSVTFKGLEPGESCPVSQDAIKTTSLLTGDGERHPFNINERCKPEACKSSKLSDKGSNFPLSAQVLFDAIKKNRSFQRLLRSKLIQMEAKIQENRQLRERVKLLKEFQVSCIRRTGQAISLKKDPRVLLISIRKSPAASSTKINDKKISPMCYGPAENAHVAKYRMVLERSPFSLDRKKWSNVERENLAKGIKQQFQEMVLQMSMNQDSSGWLCEYADNFDTILASIKDLEITPENIRKFLPKFNWDQLASKYVVGRTGAECEARWLNCEDPLINHSPWTCEEDKWLLHIIQEIGNRNWFKIAEFLTTSRTPFQCLARYQRSLNPSMLNSEWTEEEDALLRSAVTIFGASDWQSVASVLERRTGPQCSNRWKKSLCPDRKGSFTVEEDERLTVAVHLFGRKWNQIAKFVPGRTQAQCRDRYVNSLDPSLKWGGWTKEEDSRLKKAIAKHGFCWSKVAADVPPRTDSQCRKRWRVLFPDQVPMLQAARKMKKSALISNFVDRESERPCLSLNDFLPLATLDPPSDPDVVNLRQKRKNKSSTSKKKRPQKRTKKAQSCLKKPQTDKVEPCNGHGPEPHLEDNSVDAMHDHSPLDSVVTTTNDQGDFGGHNNIDNLTESNQVWTGFNELHEESHTCITPCENPEGTMDRHCENMNSLKHHTGRKSKLSASISDGAAVGSKVARNTTSKKERKEKKKCDRMVKSVQTAENHLVKNQMPKPGSLSSMQILESQDEDNITLARYLHNPSNKRFKNTDQMTQAASYASCSMKKPRRSCRAAKQTRDCQPFSFKKGYELPSEEVHNGHDRNQEMLVVQGELDEDCIDVTPGTLSVQNHSCNLKNMSAIKADENQKTMPGSVDEQTLFLDGVTAPQNISVGEDVPTDVTLASFLKKMKSKGKATTEPVDEQAIVLNGLTEIKSMSVRNDGSLDVTLASLLKKRGRRQGRAAKCASRPSHDRAK 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3839g00054 1116 CDD SANT 544 587 IPR001005 -
Pral3839g00054 1116 CDD SANT 493 537 IPR001005 -
Pral3839g00054 1116 Coils Coil 242 262 - -
Pral3839g00054 1116 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 588 642 IPR017930 -
Pral3839g00054 1116 ProSiteProfiles SANT domain profile. 540 585 IPR017884 -
Pral3839g00054 1116 SUPERFAMILY Homeodomain-like 489 583 IPR009057 -
Pral3839g00054 1116 MobiDBLite consensus disorder prediction 697 717 - -
Pral3839g00054 1116 MobiDBLite consensus disorder prediction 827 853 - -
Pral3839g00054 1116 Gene3D - 542 591 - -
Pral3839g00054 1116 Gene3D - 592 640 - -
Pral3839g00054 1116 ProSiteProfiles Myb-like domain profile. 486 537 IPR001005 -
Pral3839g00054 1116 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 433 485 IPR017930 -
Pral3839g00054 1116 MobiDBLite consensus disorder prediction 134 177 - -
Pral3839g00054 1116 ProSiteProfiles Myb-like domain profile. 588 638 IPR001005 -
Pral3839g00054 1116 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 542 582 IPR017930 -
Pral3839g00054 1116 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 486 541 IPR017930 -
Pral3839g00054 1116 Gene3D - 439 489 - -
Pral3839g00054 1116 Gene3D - 492 541 - -
Pral3839g00054 1116 ProSiteProfiles Myb-like domain profile. 541 587 IPR001005 -
Pral3839g00054 1116 Pfam Myb-like DNA-binding domain 545 604 - -
Pral3839g00054 1116 Pfam Myb-like DNA-binding domain 441 502 - -
Pral3839g00054 1116 MobiDBLite consensus disorder prediction 10 24 - -
Pral3839g00054 1116 SUPERFAMILY Homeodomain-like 567 641 IPR009057 -
Pral3839g00054 1116 SMART sant 437 487 IPR001005 -
Pral3839g00054 1116 SMART sant 338 434 IPR001005 -
Pral3839g00054 1116 SMART sant 592 640 IPR001005 -
Pral3839g00054 1116 SMART sant 490 539 IPR001005 -
Pral3839g00054 1116 SMART sant 541 589 IPR001005 -
Pral3839g00054 1116 MobiDBLite consensus disorder prediction 1 85 - -
Pral3839g00054 1116 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 14 1063 - -
Pral3839g00054 1116 CDD SANT 596 638 IPR001005 -
Pral3839g00054 1116 SUPERFAMILY Homeodomain-like 413 468 IPR009057 -
Pral3839g00054 1116 MobiDBLite consensus disorder prediction 1096 1116 - -
Pral3839g00054 1116 ProSiteProfiles Myb-like domain profile. 433 485 IPR001005 -
Pral3839g00054 1116 MobiDBLite consensus disorder prediction 680 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3839g00054 Pral-Chr3839 599403 608189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3839g00054 219 751 MYB-Related Transcription Factor Family AT3G18100 50.727 1.42e-174 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3839g00054 Myb_DNA-bind_6 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3839g00054 K09422 - gmx:100818474 810.061