Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3839g00028 ATGCTATTAGTGGATGAACAGGAAAGTAGGATTGAAGCATTTACCACTCAGAAATCACTAATTAGACGTATCATTGAAGAACTTCGGGAGGGGGTAGTGTATCATTTTGAGAACTTTGAAGTGCTCCTTAACAAAGATGAGTACAAGGTTACAGATTGTAAATATAAGTTAAGCTTTCATTGTTCAACATCGATCGAGGAAAGTGATCTTTCAATTCCATTTGATGCATTCAACTTCGTTACAATCAAGGATGTTGCTGAGTTTAATGCCAACAATGAAGACTTGATAGATGTTATTGGGTTTTTACAGTCATTTGGAGATTTGAAGGATCATAAAAAAGAAGGGGGTAGTACAAGGAAGCTCAGTTTCACAATTGCGGATGAGAATGAGAGATCTGTCAATGTGGTAGTATTCGGTCAGTGTGCCAATGAAATATTTAGAGCCAAAGGGGAAGACTTACAACCACCTATTGTTGTGCTCCTTCGTTTTGCAAGAATCAACAGGGGAAAAGGTTTCGGACATTTAACTAATCAGTTTGAGGGGACCAAGGTAGTTTTCAATCCTGACCTCCCTGAGACCAAGAAACTACTTGACAGTCTTGAAGATAATCCAGTTGCAAGTCAAAGTTTATCCCAGGTATCAAGCTGTGTCATTGCAACTGCTACAAATGAGTCACTCTTAAGTTTCCCTTGCAGGATTAATGTAGCTCAGATAATGAACTTCACTGAGCCATGTGAGGTTGTCACTAAGTTGGTCATTGAGAAGCTTGAAACAGCATATGGTTGGAATTACGATGGATGTCCATGTGATAAAAAACCATTCTATGTCAATGGGAAACTTAAGTGTAGCGCATGCAACACAGAAGTCAAGATGACTGAACCCAAGTTCAAAGTTCATTACAAAGCAAGGGATTCCACTGGTAAATGTTCAATCATTTTTTTCAATCGCTTAGCTTCTCAGTTATTGAACTGTGTTGCTACCGACCTCAAGGATCAAATGATTAAAATGGGCAAGCCTATGGGATTTCCTAAAGAGCTGTCCGATTGCATAGGGAAGGAAGTCCTGGTCAAACTTAAAATCAAGGACTTCAACATCGGTCACCCCAATAGTAGCATGGGTGTCTCACAGTTTTCTGATGATATGCACATAATCGAAAAGTTCACATATAGCGAATACCAGGAAAATCCTCCAACTCTAACTGAGGCTTCGCCGGTTGAATCGAGTGCGTCAAAATCCTCTCCAAAAATTGTCCTTGTGGAGGCAGAAGAAGATGATGACCTGACTGATTCACAGATTGTCACTCCAGAGGACACTAATGCAAAGAGGAGAAAACTGAGCAAAACCATCTCCCAAGCAGTTGATGACGGTGGTCTCTCAGAGATGTTGACCCCTACATTCAGCTCAACCAAGCTTTTGAAAACCATAAAAGAAGAAGTTTGTTGA 1443 0.4019 MLLVDEQESRIEAFTTQKSLIRRIIEELREGVVYHFENFEVLLNKDEYKVTDCKYKLSFHCSTSIEESDLSIPFDAFNFVTIKDVAEFNANNEDLIDVIGFLQSFGDLKDHKKEGGSTRKLSFTIADENERSVNVVVFGQCANEIFRAKGEDLQPPIVVLLRFARINRGKGFGHLTNQFEGTKVVFNPDLPETKKLLDSLEDNPVASQSLSQVSSCVIATATNESLLSFPCRINVAQIMNFTEPCEVVTKLVIEKLETAYGWNYDGCPCDKKPFYVNGKLKCSACNTEVKMTEPKFKVHYKARDSTGKCSIIFFNRLASQLLNCVATDLKDQMIKMGKPMGFPKELSDCIGKEVLVKLKIKDFNIGHPNSSMGVSQFSDDMHIIEKFTYSEYQENPPTLTEASPVESSASKSSPKIVLVEAEEDDDLTDSQIVTPEDTNAKRRKLSKTISQAVDDGGLSEMLTPTFSSTKLLKTIKEEVC 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3839g00028 480 Gene3D - 221 385 IPR012340 -
Pral3839g00028 480 MobiDBLite consensus disorder prediction 423 444 - -
Pral3839g00028 480 MobiDBLite consensus disorder prediction 395 414 - -
Pral3839g00028 480 CDD RPA1_DBD_B_like 97 193 - -
Pral3839g00028 480 SUPERFAMILY Nucleic acid-binding proteins 77 201 IPR012340 -
Pral3839g00028 480 Pfam Replication factor-A C terminal domain 252 362 IPR013955 -
Pral3839g00028 480 Gene3D - 1 69 IPR012340 -
Pral3839g00028 480 Gene3D - 71 209 IPR012340 -
Pral3839g00028 480 Pfam Replication protein A OB domain 89 146 IPR031657 -
Pral3839g00028 480 SUPERFAMILY Nucleic acid-binding proteins 253 362 IPR012340 -
Pral3839g00028 480 CDD RPA1_DBD_A_like 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3839g00028 Pral-Chr3839 383164 385520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3839g00028 3 360 Core DNA Replication Machinery Family AT5G08020 23.784 1.55e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3839g00028 - - pcin:129301944 315.464