Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3839g00016 ATGCCTGTTGTTTCAGATGCTTCAGCAACTGCAGAACGCATAAAATGCAGAAGGCCAAGAAGCCATTTGGGTCATCTCATTCAAGAAGCAGATCCGAACCCGCCAATCCCTTCGATAATCGAGTTCACTCGCTGCAAATCAACCATTTCGTCTCTTCTTCTCTCTACTTTCTCCAACAACGCGTCGAATGAGAGTGTACAGGGTAACGGAGTCAACATCGGCGGCAGTGGCAGCGGCCGTAGCAAGAAGAAGAACAATTTCTCTGCGGCTGCAACCTTCAGAGGACTCGGATGCACCGCCGGTGCGTCGCAGCAGGTTTCGGTTCCGGCGGTGATTCGGTCGTCGGCGGACTGGCAAGGAAAGAAGGCTAGAAAGAAGAAGCATAAAAGAAATAGCACCAAGACCTGTCCTGGGGCTGTTGATGGTTCTGGTTCTGCTAATTGCGTTGATTTTCAAGACGTCTGGTGTGGTCCTGGAATTGGGTTTTCGGCCGATGCTGCTGCGTCTGTTGATTGCGTCGTGGCGAGGAAGAATGTTTCTTCGAGAGGGAAGATTGATGTGGAGAGGATGACTCACAGAGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGAGGAATGTTAGATTCACATGACCAGTTTAGGGACTGGAGACTTGATGTTGATAATATGTCATATGAGCAACTTCTTGAGCTTGAAGAGAAGATTGGTTTTGTCAACACTGGTCTCAAAGAAGACGAGATAGGATGCCACATAAGGAAGATTCAATATCCATTTTTGAGTGAAGCATTGAAGCACCATATTAACAAAAAGTGCAGCATTTGTCAGGAAGAATATGAAGGAGATGATGAGGTGGGGAAGCTAAAGTGTGAACACAGCTATCACTTTGAGTGCATCAGACAATGGCTTGCACAGAAAAATTTCTGCCCAGTCTGTAAGCAAGAAGTTGTGGTTCGTCACTAG 963 0.4694 MPVVSDASATAERIKCRRPRSHLGHLIQEADPNPPIPSIIEFTRCKSTISSLLLSTFSNNASNESVQGNGVNIGGSGSGRSKKKNNFSAAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKARKKKHKRNSTKTCPGAVDGSGSANCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSSRGKIDVERMTHREIMMLQGGLLMGGMLDSHDQFRDWRLDVDNMSYEQLLELEEKIGFVNTGLKEDEIGCHIRKIQYPFLSEALKHHINKKCSICQEEYEGDDEVGKLKCEHSYHFECIRQWLAQKNFCPVCKQEVVVRH 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3839g00016 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 316 IPR045191 GO:0061630
Pral3839g00016 320 FunFam E3 ubiquitin-protein ligase rnf12-A 239 318 - -
Pral3839g00016 320 ProSiteProfiles Zinc finger RING-type profile. 272 313 IPR001841 -
Pral3839g00016 320 SMART ring_2 272 312 IPR001841 -
Pral3839g00016 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 318 IPR013083 -
Pral3839g00016 320 SUPERFAMILY RING/U-box 271 318 - -
Pral3839g00016 320 MobiDBLite consensus disorder prediction 117 137 - -
Pral3839g00016 320 Pfam Ring finger domain 271 313 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3839g00016 Pral-Chr3839 265099 269572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3839g00016 2 227 C3H Transcription Factor Family AT1G73760 33.110 2.81e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3839g00016 - - qsa:O6P43_008540 410.609