Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3824g00002 CTCGAATTAACACCACATTCAGTAGTTGTGGCTACTACAAGGAGGCTGCCTTCAGATTCTGGTGGTGCCTTCGCAGACTGGGCAACCACATCCTCTGCCGGACGCGCCGCCGCCCCCGACGATCTCTCCCTGGGATTCAATGCCGGTCCCGCCTCCGCCACCCGGGGGGCTCCGGCCGGAATGTGGTCCGGAGGGTCTAGGTCAGTCAACTTTGGCCATTCCGAGATGGGCATGGTGGGCCTTCGAGATGTCTTCGTGGTGGCGTCTGCTTCTCCCTACCATAACGACGTCGTCATGCCCGATCCTCACAACGGCGCCATCCACGGCGTCGGCGTTATCCCACTCCTCCCGGCGGGTCCTTGTCTCGACGGTGACACAGGCAACATGCTCAATCTCAGCAGTCATAATCGAAGCCGTAGCAGCGGAATTCAGCTGTGGCAAGATCATTACCTGAAGGAGCACGGCCTTCCCGAGCACAACGGTACGACTAGCTCCGGCAATCTTGCTCTCAGCGGCGGCGGCGGTGGAGGGTTAAGCGGCTCGGCTTTGAGCTCAGGAGGTACAACGTGTCAGGACTGTGGCAATCAGGCGAAGAAAGATTGTAGTCATAGAAGGTGCAGAACTTGCTGCAAGAGCCGAGGTTTTGATTGCCCTACTCACGTGAAGAGCACATGGGTACCCGCTGCTCGTCGGAGGGAACGCCAGCATATGGCTGCCGCCGCTTCCGCTGCAGCCGGTGGTGGTGGTGGGTTCAGTGGAGCTACATCAGTCGCCAAGAAACCTAAACTCGTCGCCTCGCAAACCACTACCGCCTCACGTACTTCTACTTCCAACACAACTCCTCCTCGAAGCTTTGACACTACCTCAAGCCATCAAGATGCGAGTTTCAAAGAGTCATTGCCGGGTCAAGTACGTGCGCCGGCTGTGTTCAAGTGCGTTCGTGTTTCGGCGGTGGATGACGGCGGAGACGACGAGTATGCTTATCAAGCAGTTGTGAAGATTGGTGGCCATGTGTTCAAAGGGATTCTGTATGATCAAGGGGTTGAAAATGGAGAAGCCTATCCTAATATCTCTGACCTGCATTTGGGCGGTGGTGGTGGTGGACACGGCGGAAGCAGCGGCGGTGCCGGAAGAAACGGAGCTTCTTCTTCGTCCCCAATGCTTGATCCTTCTGATATATACGCCGCTGCTTCAGGTGGGGCTTTTCTTGCCGGTTCAACATATGGTAATGCCATAAATTGA 1242 0.5652 LELTPHSVVVATTRRLPSDSGGAFADWATTSSAGRAAAPDDLSLGFNAGPASATRGAPAGMWSGGSRSVNFGHSEMGMVGLRDVFVVASASPYHNDVVMPDPHNGAIHGVGVIPLLPAGPCLDGDTGNMLNLSSHNRSRSSGIQLWQDHYLKEHGLPEHNGTTSSGNLALSGGGGGGLSGSALSSGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQHMAAAASAAAGGGGGFSGATSVAKKPKLVASQTTTASRTSTSNTTPPRSFDTTSSHQDASFKESLPGQVRAPAVFKCVRVSAVDDGGDDEYAYQAVVKIGGHVFKGILYDQGVENGEAYPNISDLHLGGGGGGHGGSSGGAGRNGASSSSPMLDPSDIYAAASGGAFLAGSTYGNAIN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3824g00002 413 MobiDBLite consensus disorder prediction 365 385 - -
Pral3824g00002 413 NCBIfam LRP1 C-terminal domain 300 348 IPR006511 -
Pral3824g00002 413 MobiDBLite consensus disorder prediction 232 300 - -
Pral3824g00002 413 Pfam Domain of unknown function (DUF702) 187 349 - -
Pral3824g00002 413 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 134 396 IPR007818 GO:0003700|GO:0006355
Pral3824g00002 413 MobiDBLite consensus disorder prediction 261 297 - -
Pral3824g00002 413 NCBIfam putative zinc finger domain, LRP1 type 189 231 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3824g00002 Pral-Chr3824 40211 41860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3824g00002 10 393 C2H2 Transcription Factor Family AT5G12330 49.517 4.58e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral3824g00002 DUF702 9.2e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3824g00002 - - vvi:100251674 439.884