Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3821g00003 ATGATTAGTACAATTTTCAGAAGATCTTATTCTTTAGTCTCAAGGCGTGCTTTCGCCGCCTCCGCGTTGATCGAGAATCACCATCACCTCATCTCATCAGTCGCCGGCTATGGTGGGGTTGCTGGTAGTGAGCTTCGGCCATTCTCCAACTTGTTTGGTTCCGGTGTGTTCAAGTCAAGCGCATTTCATTCCCAAGCGGGGCCGTTGAATTTCCGGGCGTCATTGGTTCCTCGTGCCGAGTATGCTGTTGATGATTACTCCTTCGAAGAAGGGCCCAAGGGAAACAGTGATGATGGCCTTGATATAGCGAAGCTCGGTATTGCTCAGGATATTGTCTCTGCTTTGGCCAAGAAAGGTATAACGAAGCTCTTCCCTATACAGAGAGCTGTTCTGGAACCTGCCATGCAAGGTCGTGATATGATTGGTCGGGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCATGGACAAGATCATTCAGTTTAATGCCAAGCACGGACGAGGAAGGGATCCTCTTGCTTTGGTTTTGGCCCCAACTAGAGAACTTGCTCGGCAGGTTGAAAAGGAATTTTACGAGTCAGCACCTAATTTGGATACAATTTGTGTTTATGGGGGAACACCCATTTCACGCCAAATGAGGCAGCTTGACTATGGCGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTTAACAGAGGTGCTCTAAATTTGAAGGACATTCAGTTTGTTGTACTTGATGAAGCTGATCAGATGCTTCAAGTCGGCTTTCAGGAGGATGTTGAAAAAATCTTGGAGAGGCTGCCTCCCAAGCGCCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGCAGATTTCTCGCAATTACTTAAATAATCCATTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACGTTATACTCAATTGCTTCAGATATGTATGGAAAAGCAGGGATTATTCAAACTCTAGTAACGGAACATGCTAATGGAGGAAAGTGTATTGTTTTCACCCAAACCAAACGTGATGCTGATAGACTAGCATATTCCATGCAAAATAGCCTTAGGTGTGAGGCCTTGCATGGAGATATTTCACAAGCTCAAAGGGAAAGAACTCTTTCTGGCTTTAGAGAAGGACATTTCAGTGTTTTAGTGGCAACCGATGTTGCTTCACGTGGGCTTGACATACCGAATGTTGACCTTGTAATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCGGGAAGGACAGGTCGAGCTGGGAAGAAAGGAACTGCTATCCTTATTTATACTCAAGATCAAACCAGGGCTGTCAAGATTATTGAGCGTGATGTTGGCTGTAGATTTTCTGAGCTGCCGAGGATTACTGTTGAAGGTCAATCAGTAGGCATGTTTAATAGCATGGGTGGTAGTCGATCTAGCAGTTTTGGAGGCATGCGGGATCGTAGATTTGGTGATTCAGGTTTTGGCCGTGGTCCGGGATTCAGCCGCTCCAGCTTTGGTAATTCTGATGAGAAGGGAAGGTATGGTGGACCTAATTCTGGTCGTTTCAGCGGCCCTGGATCAAGCCAACCAAGAGGCGGGTTTGGGGGATCATTTGGTAATTCTTCTGGTGAAAGCTCTGGTCGTTATGGTTCCTTTGGTGGCTTTGGCTCTAGACCATCAGACAGTGGTTTTGGCTCTAGACCATCAGATGGTGGCTTTGGCAGATCCGGCATGGATCGAGCAGGAAGCACTGGAGGATTTGGGTCTAGTCATCCAAGTGGTGGCAGTGGATTTGGTGGTTCAGCTCGTTCTGGTGGTTTTGGCTCTGGTCAATCTAGTGTATTTGGCGACAGATATTCAAGCCAAAGGAATGCCTTTGGTGATTCTCGAGGTAGTGGTGCTTTTGGGAATGACCAGAATAATGATCAGGACAGTGGGAGAAGGCTCTTCTGA 1992 0.4578 MISTIFRRSYSLVSRRAFAASALIENHHHLISSVAGYGGVAGSELRPFSNLFGSGVFKSSAFHSQAGPLNFRASLVPRAEYAVDDYSFEEGPKGNSDDGLDIAKLGIAQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDIQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIRQISRNYLNNPLTIDLVGDSDQKLADGITLYSIASDMYGKAGIIQTLVTEHANGGKCIVFTQTKRDADRLAYSMQNSLRCEALHGDISQAQRERTLSGFREGHFSVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYTQDQTRAVKIIERDVGCRFSELPRITVEGQSVGMFNSMGGSRSSSFGGMRDRRFGDSGFGRGPGFSRSSFGNSDEKGRYGGPNSGRFSGPGSSQPRGGFGGSFGNSSGESSGRYGSFGGFGSRPSDSGFGSRPSDGGFGRSGMDRAGSTGGFGSSHPSGGSGFGGSARSGGFGSGQSSVFGDRYSSQRNAFGDSRGSGAFGNDQNNDQDSGRRLF 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3821g00003 663 Pfam Helicase conserved C-terminal domain 334 439 IPR001650 -
Pral3821g00003 663 CDD DEADc 111 306 - -
Pral3821g00003 663 SMART ultradead3 119 322 IPR014001 -
Pral3821g00003 663 MobiDBLite consensus disorder prediction 546 561 - -
Pral3821g00003 663 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 305 IPR014001 -
Pral3821g00003 663 Gene3D - 101 309 IPR027417 -
Pral3821g00003 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 460 IPR027417 -
Pral3821g00003 663 CDD SF2_C_DEAD 341 448 - -
Pral3821g00003 663 Pfam DEAD/DEAH box helicase 124 291 IPR011545 GO:0003676|GO:0005524
Pral3821g00003 663 MobiDBLite consensus disorder prediction 618 657 - -
Pral3821g00003 663 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 101 481 - -
Pral3821g00003 663 SMART helicmild6 359 439 IPR001650 -
Pral3821g00003 663 MobiDBLite consensus disorder prediction 480 663 - -
Pral3821g00003 663 FunFam ATP-dependent RNA helicase RhlE 93 308 - -
Pral3821g00003 663 Gene3D - 320 480 IPR027417 -
Pral3821g00003 663 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3821g00003 Pral-Chr3821 11338 17600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3821g00003 105 471 Eukaryotic Initiation Factors Gene Family AT3G19760 32.546 5.09e-67 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3821g00003 - - gmx:100786041 770.385