Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3820g00005 ATGAGGCTTTCTTCTTCAGGACTTGGTCAACCGGTTCAAGAAGATTGTGATTATACAGGGGAGAAAAAATGTTTAAATTCCGAATTATGGCATGCATGTGCTGGTCCTCTGGTGTCTCTGCCGCCTGTTGGAAGTCGTGTGGTCTACTTTCCCCAAGGTCATAGTGAGCAGGTTGCTGCTTCAACAAACAAGGAAATAGATGCACATATTCCCAATTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACTATGCATGCAGATGTGGAAACGGATGAAGTATATGCTCAAATGACTCTGCAACCTTTAAGTCCGCAAGAGCGAAAGGATATATATCTACTGCCTGCAGAATTGGGTACTGCCAGCAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTCCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCGCTGCAGCCTCCTGCACAGGAACTAATTGCCAGGGATCTCCATGATAATGAATGGAAATTCAGACACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTAACTACAGGGTGGAGTGTCTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGATAAAAATCAATTACTCTTGGGAATCCGGCGAGCAATTCGTCCACAGACTGTTATGCCGTCCTCAGTTTTGTCAAGTGACAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCACGCGGCTGCAACGAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTCATTCCCTTAGCCAAGTATGTCAAAGCTGTATATCATACCCGAGTTTCTGTTGGCATGCGATTTAGGATGTTATTCGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGTACTATAACAGGCATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCAGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGACAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAACCGTTGACAACATTCCCTATGTATCCATCCCCATTTCCTTTGAGGCTGAAACGCCCTTGGCCGTCAGGACTACCTTCTTTTGGTCTAAAAGATGGTGACATGAACATTGGTTCTCCATACACGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAGCCAACACTTGGTGCTTCCATGTCCGGACTTCAGCCAGAAATATACCAAGCAATGGCTGCTGCTGCACTTCAGGAAATGAGAGCAATGGGTCCGTCTAAACCTTCTTCTGAATCTCTGCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTTCTGGTATCCAGAGGCAAGTGTTACAGCAGTCTCAGTCCCAAAATGTCCTATACAACTTTCAAGAAAACCAGATTCCTTCTCAGTCTTCACTTCTGCAACGACAGATGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAGCAGCATCGACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAATGTTGTTTCTCCTTTGTCTAATTTTGCATCACCCACCCAGTTTGTCTCTCCACCCATGCCAGCCATTGCTTCAAATTGCCAGCAGCAGAGTTTCCCTGAACCTGCCAGGAACCAGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCACAGTCTACTTGGATCGCTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGAATGGATCCAACTCTCTGGTTTCTCCTGCTTCCTTACTACCCAAGCAAATAACTGCTGAACCTCAGTTTCATACTGCTGCTGCTCAGTGTGTATTACCCCAGGTGGGAAACTTGGGTACATCACACTCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCCAGCTTCAAACTTCGGTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGATATGACAACATCAAGTTGTGTAGATGAATCTGGTTTTTTGCAGTCTTCAGAAAATGTGGAGCAAGCAAATACATCAACTGGAACCTTTGTCAAGGTTCACAAGTTAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTACGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTGTCTCCACTTGAAGTACAACAAATGGGCAGAGAAAGTTCTGGTCCCACGGCTTCTGCATTAGCCCACAGGCTTTCTACCACTGACAACTATGCGAGTCGGCAAGAGTTGAGAAATCCTAGCAATGGGATTGCGTCAATGGGGTCTCTAGACTATTAG 2565 0.4628 MRLSSSGLGQPVQEDCDYTGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEIDAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQERKDIYLLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRAIRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFGLKDGDMNIGSPYTWLQGGLGDQGMQSLNFQGLGVAPWMQPTLGASMSGLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNVPGAPSSGIQRQVLQQSQSQNVLYNFQENQIPSQSSLLQRQMQRYHPYNDQRQQQQQQHRPNSLPVQQQISNVVSPLSNFASPTQFVSPPMPAIASNCQQQSFPEPARNQNQIPSSDVSAIHSLLGSLPQDGVSQLLNMNGSNSLVSPASLLPKQITAEPQFHTAAAQCVLPQVGNLGTSHSNVSELPILPPFPGREYSAYPASNFGGATGTDYPPSSDMTTSSCVDESGFLQSSENVEQANTSTGTFVKVHKLGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESSGPTASALAHRLSTTDNYASRQELRNPSNGIASMGSLDY 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3820g00005 854 MobiDBLite consensus disorder prediction 833 854 - -
Pral3820g00005 854 Pfam AUX/IAA family 712 805 IPR033389 -
Pral3820g00005 854 FunFam Auxin response factor 718 812 - -
Pral3820g00005 854 Gene3D - 719 812 - -
Pral3820g00005 854 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Pral3820g00005 854 ProSiteProfiles PB1 domain profile. 723 807 IPR000270 GO:0005515
Pral3820g00005 854 FunFam Auxin response factor 131 235 - -
Pral3820g00005 854 CDD B3_DNA 132 233 IPR003340 GO:0003677
Pral3820g00005 854 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 812 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral3820g00005 854 SUPERFAMILY CAD & PB1 domains 714 797 - -
Pral3820g00005 854 Gene3D - 297 369 - -
Pral3820g00005 854 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral3820g00005 854 MobiDBLite consensus disorder prediction 458 489 - -
Pral3820g00005 854 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Pral3820g00005 854 Gene3D - 131 235 IPR015300 -
Pral3820g00005 854 MobiDBLite consensus disorder prediction 464 489 - -
Pral3820g00005 854 SMART B3_2 133 235 IPR003340 GO:0003677
Pral3820g00005 854 FunFam Auxin response factor 297 369 - -
Pral3820g00005 854 SUPERFAMILY DNA-binding pseudobarrel domain 118 262 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3820g00005 Pral-Chr3820 4843 13233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3820g00005 102 817 B3 DNA Binding Superfamily AT5G37020 54.233 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral3820g00005 AUX_IAA 1.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3820g00005 - - pcin:129302482 1438.71